View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_low_7 (Length: 621)

Name: NF17755_low_7
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_low_7
NF17755_low_7
[»] chr1 (9 HSPs)
chr1 (333-538)||(34655011-34655216)
chr1 (333-516)||(39708905-39709087)
chr1 (392-531)||(34118087-34118228)
chr1 (395-531)||(615823-615956)
chr1 (333-451)||(26236622-26236741)
chr1 (337-405)||(34118009-34118077)
chr1 (392-454)||(11407929-11407992)
chr1 (19-85)||(34117766-34117832)
chr1 (333-406)||(11408001-11408074)
[»] chr5 (17 HSPs)
chr5 (321-531)||(41355414-41355623)
chr5 (392-522)||(7766882-7767012)
chr5 (392-531)||(27169956-27170096)
chr5 (391-522)||(18697047-18697180)
chr5 (396-531)||(7271893-7272025)
chr5 (395-531)||(6030258-6030391)
chr5 (333-405)||(7767022-7767094)
chr5 (333-405)||(18696966-18697038)
chr5 (19-80)||(1157562-1157623)
chr5 (395-512)||(26656827-26656941)
chr5 (395-512)||(26928414-26928528)
chr5 (19-79)||(7767369-7767429)
chr5 (333-405)||(27170106-27170178)
chr5 (19-66)||(7271530-7271577)
chr5 (19-85)||(18696727-18696793)
chr5 (333-365)||(6030388-6030420)
chr5 (333-363)||(38958230-38958260)
[»] chr4 (14 HSPs)
chr4 (391-537)||(23054096-23054242)
chr4 (398-531)||(53202387-53202520)
chr4 (391-531)||(47518319-47518459)
chr4 (321-405)||(47518468-47518551)
chr4 (321-405)||(53202288-53202371)
chr4 (334-397)||(23054258-23054321)
chr4 (321-383)||(34227057-34227118)
chr4 (19-85)||(53201974-53202040)
chr4 (20-85)||(47518787-47518852)
chr4 (19-78)||(34227336-34227395)
chr4 (392-449)||(6410106-6410164)
chr4 (19-85)||(23054606-23054672)
chr4 (396-454)||(24957550-24957609)
chr4 (333-406)||(6410024-6410097)
[»] chr2 (18 HSPs)
chr2 (321-444)||(3921614-3921736)
chr2 (392-537)||(17375392-17375537)
chr2 (392-531)||(1895525-1895664)
chr2 (391-531)||(1551467-1551606)
chr2 (391-531)||(17281813-17281952)
chr2 (321-405)||(17281961-17282045)
chr2 (321-405)||(1895432-1895515)
chr2 (322-405)||(1551615-1551697)
chr2 (20-85)||(17282293-17282358)
chr2 (333-405)||(17375310-17375382)
chr2 (395-531)||(4869707-4869840)
chr2 (25-85)||(1895130-1895190)
chr2 (456-531)||(4140576-4140650)
chr2 (19-85)||(1551922-1551988)
chr2 (430-537)||(34660352-34660456)
chr2 (19-85)||(3921314-3921380)
chr2 (392-452)||(38531146-38531207)
chr2 (333-365)||(34660319-34660351)
[»] chr6 (6 HSPs)
chr6 (393-531)||(20740694-20740831)
chr6 (392-516)||(21881582-21881706)
chr6 (333-405)||(20740611-20740683)
chr6 (333-405)||(21881500-21881572)
chr6 (20-85)||(20740324-20740389)
chr6 (20-69)||(21881138-21881187)
[»] chr8 (5 HSPs)
chr8 (394-537)||(10408942-10409085)
chr8 (333-517)||(5994663-5994870)
chr8 (333-405)||(10408858-10408930)
chr8 (393-454)||(6444151-6444213)
chr8 (322-406)||(6444058-6444141)
[»] chr7 (3 HSPs)
chr7 (392-531)||(3302690-3302829)
chr7 (335-405)||(3302610-3302680)
chr7 (19-85)||(39020530-39020596)
[»] chr3 (4 HSPs)
chr3 (25-85)||(43275667-43275727)
chr3 (333-365)||(18269763-18269795)
chr3 (19-68)||(18270063-18270112)
chr3 (395-451)||(18269710-18269766)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 333 - 538
Target Start/End: Original strand, 34655011 - 34655216
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacacaacctccac 432  Q
    |||||||||||| ||||||| |||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34655011 aaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacataacctccac 34655110  T
Q  433 cacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactggcaagcatccaacgacacaccacgaaaccaaccaacgtt 532  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |     
T  34655111 cacaaccaaaagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaacaccggaaagcatccaacgacacaccacgaaaccaaccaacatc 34655210  T
Q  533 tcaact 538  Q
    ||||||    
T  34655211 tcaact 34655216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 333 - 516
Target Start/End: Complemental strand, 39709087 - 39708905
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacacaacctccac 432  Q
    ||||||||||||||||||||||||| ||||||||  ||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  39709087 aaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacctatattgcgagcaaacataacctccac 39708988  T
Q  433 cacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactggcaagcatccaacgacacaccac 516  Q
    ||||||||||||||||||| || ||||||||  |||||||| ||||||||||||| ||| | |||||||| ||| |||||||||    
T  39708987 cacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccaccgacaagcatctaacaacacaccac 39708905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 392 - 531
Target Start/End: Original strand, 34118087 - 34118228
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctccaccaca--accaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaac 489  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||  ||||| |||||||||||| |||||| ||||||| |||||||||| |||||| |    
T  34118087 gatccatcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatccacgaaaactaaacaacc 34118186  T
Q  490 actggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
    || ||||||||||||||||||||||| |||||| ||||||||    
T  34118187 accggcaagcatccaacgacacaccatgaaacccaccaacgt 34118228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 395 - 531
Target Start/End: Original strand, 615823 - 615956
Alignment:
Q  395 ccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactgg 494  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| || ||||||||   ||  |||  |||||||||||| ||| |     
T  615823 ccatcaccacctatgttgcgatcaaacataatctccaccacaaccaagagagaaaacgaatcaaatagt---agctccaataaaaccaaacaaccaccga 615919  T
Q  495 caagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
     ||||||||||||||||||||||||||| ||||||||    
T  615920 gaagcatccaacgacacaccacgaaacccaccaacgt 615956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 333 - 451
Target Start/End: Complemental strand, 26236741 - 26236622
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacacaacctcca- 431  Q
    |||||||| ||||||||||||||||||| |||||  || ||||||| ||||| |||| ||||||||||||| ||||||| |||| ||||| ||||||||     
T  26236741 aaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctgatccatcaccatctatgtttcgagtaaacataacctccat 26236642  T
Q  432 ccacaaccaagagagaaaac 451  Q
    |||| ||| |||||||||||    
T  26236641 ccaccaccgagagagaaaac 26236622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 34118009 - 34118077
Alignment:
Q  337 caacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    |||||||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||    
T  34118009 caacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccacc 34118077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 11407992 - 11407929
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctcca-ccacaaccaagagagaaaacaaa 454  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  11407992 gatccatcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaa 11407929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 34117766 - 34117832
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||| |||||||||||  |||||||||||||||||||| |||||| ||| |||||| ||||    
T  34117766 ccaaacaccaacgttagctctcccaagcaccttcatccaaaacatacctcacaaagaaccgcaaaag 34117832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 11408074 - 11408001
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacct 406  Q
    ||||||||||||||||||||   |||||||||||  |  |||||||| |||| | || ||||||||||||||||    
T  11408074 aaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccacct 11408001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 8e-75; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 321 - 531
Target Start/End: Complemental strand, 41355623 - 41355414
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaa 420  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  41355623 tgaagtaccacaaa-ccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcaccgcctatgttgcgagcaaa 41355525  T
Q  421 cacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactggcaagcatccaacgacacaccacgaaa 520  Q
     | ||||||||||||||||||||||||||||||| ||||||| || ||| ||||| |||| |||||| ||| |||||||||||||||||||||||| |||    
T  41355524 tataacctccaccacaaccaagagagaaaacaaatcaaatagcctaagatccacggaaactaaacaaccaccggcaagcatccaacgacacaccacaaaa 41355425  T
Q  521 ccaaccaacgt 531  Q
    || ||||||||    
T  41355424 cccaccaacgt 41355414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 392 - 522
Target Start/End: Complemental strand, 7767012 - 7766882
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacac 491  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  7767012 gatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaccac 7766913  T
Q  492 tggcaagcatccaacgacacaccacgaaacc 522  Q
     ||||||||||||||||||||||||||||||    
T  7766912 cggcaagcatccaacgacacaccacgaaacc 7766882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 392 - 531
Target Start/End: Complemental strand, 27170096 - 27169956
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagag-aaaacaaaacaaatagtctgagacccacgaaaaccaaacaaaca 490  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||| ||    
T  27170096 gatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaacca 27169997  T
Q  491 ctggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
      || ||||||||| | ||||||||||||||| ||||||||    
T  27169996 tcggaaagcatccagcaacacaccacgaaacccaccaacgt 27169956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 391 - 522
Target Start/End: Original strand, 18697047 - 18697180
Alignment:
Q  391 tgatccatcaccacctatgttgcgagcaaacacaacctccaccaca--accaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaa 488  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||  ||||| | | |||||||| ||||||||||||||||||||||||||||||||     
T  18697047 tgatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatataaaaaacaaatcaaatagtctgagacccacgaaaaccaaacaac 18697146  T
Q  489 cactggcaagcatccaacgacacaccacgaaacc 522  Q
    ||| | |||  |||||||||||||||||||||||    
T  18697147 caccgacaattatccaacgacacaccacgaaacc 18697180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 396 - 531
Target Start/End: Original strand, 7271893 - 7272025
Alignment:
Q  396 catcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactggc 495  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||   || ||||  |||||||||||| ||||| |    
T  7271893 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt---agccccaataaaaccaaacaaccactgac 7271989  T
Q  496 aagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
    |||||||||||||||||  | |||||| ||||||||    
T  7271990 aagcatccaacgacacataaagaaacccaccaacgt 7272025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 395 - 531
Target Start/End: Complemental strand, 6030391 - 6030258
Alignment:
Q  395 ccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactgg 494  Q
    ||||||||||||||||| ||| |||||| ||| |||||| ||||||||||||||||| || ||||||||   ||  |||  |||||||||||| ||| |     
T  6030391 ccatcaccacctatgttccgatcaaacataacatccaccgcaaccaagagagaaaacgaatcaaatagt---agttccaataaaaccaaacaaccaccga 6030295  T
Q  495 caagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
     ||||||||||||||||||||||||||| ||||||||    
T  6030294 gaagcatccaacgacacaccacgaaacccaccaacgt 6030258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 7767094 - 7767022
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||||||||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||    
T  7767094 aaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcaccacc 7767022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 18696966 - 18697038
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||    
T  18696966 aaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatccatcaccacc 18697038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 1157623 - 1157562
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgc 80  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1157623 ccaaacaccaccattagctctcctaagcaccttcatccaaaacacacctcataaacaaccgc 1157562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 395 - 512
Target Start/End: Original strand, 26656827 - 26656941
Alignment:
Q  395 ccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactgg 494  Q
    |||||||||| ||| ||||||||||||| ||||| ||| |||||||||||||||||| || ||||||||   || ||||  |||| |||||||  || |     
T  26656827 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaaccga 26656923  T
Q  495 caagcatccaacgacaca 512  Q
    ||||||||||||||||||    
T  26656924 caagcatccaacgacaca 26656941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 395 - 512
Target Start/End: Original strand, 26928414 - 26928528
Alignment:
Q  395 ccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactgg 494  Q
    |||||||||| ||| ||||||||||||| ||||| ||| |||||||||||||||||| || ||||||||   || ||||  |||| |||||||  || |     
T  26928414 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaaccga 26928510  T
Q  495 caagcatccaacgacaca 512  Q
    ||||||||||||||||||    
T  26928511 caagcatccaacgacaca 26928528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 7767429 - 7767369
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccg 79  Q
    ||||| |||||| |||||||||  ||||||||||||||||||||||||||| ||| |||||    
T  7767429 ccaaagaccaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccg 7767369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 27170178 - 27170106
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||  || | | ||||||||||| ||||||    
T  27170178 aaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccattaccacc 27170106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 7271530 - 7271577
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacc 66  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  7271530 ccaaacaccacccttagctctctcaagcaccttcatccaaaacacacc 7271577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 18696727 - 18696793
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| ||||||||||||||||  ||||||||||| || |||||||||||| ||| |||||| ||||    
T  18696727 ccaaacaccaccgttagctctcccaagcaccttcacccgaaacacacctcacaaagaaccgcaaaag 18696793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 6030420 - 6030388
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccat 365  Q
    |||||||||||||||||||||||||||||||||    
T  6030420 aaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 363
Target Start/End: Complemental strand, 38958260 - 38958230
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaacc 363  Q
    |||||||||||||||||||||||||||||||    
T  38958260 aaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 391 - 537
Target Start/End: Complemental strand, 23054242 - 23054096
Alignment:
Q  391 tgatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaaca 490  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||    
T  23054242 tgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctcagacccacgaaaaccaaacaacca 23054143  T
Q  491 ctggcaagcatccaacgacacaccacgaaaccaaccaacgtttcaac 537  Q
    ||| |||||||||| | |||| |||| ||||| |||||||| |||||    
T  23054142 ctgacaagcatccagcaacacgccacaaaacccaccaacgtctcaac 23054096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 398 - 531
Target Start/End: Original strand, 53202387 - 53202520
Alignment:
Q  398 tcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactggcaa 497  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | |||    
T  53202387 tcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaaccacagacaa 53202486  T
Q  498 gcatccaacgacacaccacgaaaccaaccaacgt 531  Q
    ||||||||||||||||||| ||||| ||||||||    
T  53202487 gcatccaacgacacaccacaaaacccaccaacgt 53202520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 391 - 531
Target Start/End: Complemental strand, 47518459 - 47518319
Alignment:
Q  391 tgatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaaca 490  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||||||||| ||||||||||||| ||    
T  47518459 tgatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagagaaaacaaatcaaatagtctgagacccatgaaaaccaaacaacca 47518360  T
Q  491 ctggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
    | | |||||||||||||||||||||| ||| | ||||||||    
T  47518359 ccgacaagcatccaacgacacaccacaaaatctaccaacgt 47518319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 47518551 - 47518468
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47518551 tgaagtaccacaaa-cgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattcatcaccacc 47518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 53202288 - 53202371
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  53202288 tgaagtaccacaaa-ccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcaccacc 53202371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 23054321 - 23054258
Alignment:
Q  334 aaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatcca 397  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||||    
T  23054321 aaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatcca 23054258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 34227118 - 34227057
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaac 383  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34227118 tgaagtaccacaga-ccaacacaaccaaagatccattgaaaccatataagttcataagcgaac 34227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 53201974 - 53202040
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  53201974 ccaaacaccaccatgagctctcctaagcaccttcatccaaaacacacctcgtaaacaaccgcaaaag 53202040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 47518852 - 47518787
Alignment:
Q  20 caaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||| |||||| ||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||    
T  47518852 caaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaaccgcaaaag 47518787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34227395 - 34227336
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaacc 78  Q
    ||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||    
T  34227395 ccaaacaccaccattggttctcctaagcaccttcatccaaaacacacctcataaacaacc 34227336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 6410106 - 6410164
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctcca-ccacaaccaagagagaaa 449  Q
    ||||||||||||||||| ||||||||||||| |||||||| |||| |||||||||||||    
T  6410106 gatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 23054672 - 23054606
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||    
T  23054672 ccaaacaccacaattagctctctcaagcaccttcatccaaaacacacctcacaaagaaccgcaaaag 23054606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 454
Target Start/End: Complemental strand, 24957609 - 24957550
Alignment:
Q  396 catcaccacctatgttgcgagcaaacacaacctcca-ccacaaccaagagagaaaacaaa 454  Q
    ||||||||||||||||||||||||||| |||||||| ||||  |||||| ||||||||||    
T  24957609 catcaccacctatgttgcgagcaaacataacctccacccacctccaagaaagaaaacaaa 24957550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 6410024 - 6410097
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacct 406  Q
    |||||||||||||| ||||| |||||||||||||  || ||||||||||||  |||| ||||| ||| ||||||    
T  6410024 aaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccacct 6410097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 9e-47; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 321 - 444
Target Start/End: Original strand, 3921614 - 3921736
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaa 420  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3921614 tgaagtaccacaaa-ccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatatgatccatcaccacctatgttgcgagcaaa 3921712  T
Q  421 cacaacctccaccacaaccaagag 444  Q
    || ||| |||||||||||||||||    
T  3921713 cataacatccaccacaaccaagag 3921736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 392 - 537
Target Start/End: Original strand, 17375392 - 17375537
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacac 491  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| || |||||||| ||||| ||||||||||||||||| |||    
T  17375392 gatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagagaaaacgaatcaaatagtgtgagagccacgaaaaccaaacaaccac 17375491  T
Q  492 tggcaagcatccaacgacacaccacgaaaccaaccaacgtttcaac 537  Q
     | || ||||||||||||||||||||||||| |||||||| |||||    
T  17375492 cgacaggcatccaacgacacaccacgaaacccaccaacgtctcaac 17375537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 392 - 531
Target Start/End: Original strand, 1895525 - 1895664
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacac 491  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| |||    
T  1895525 gatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtctgagacccacaaaaaccaaacaaccac 1895624  T
Q  492 tggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
     | |||||||||||||||||||||| ||| | ||||||||    
T  1895625 cgacaagcatccaacgacacaccacaaaatccaccaacgt 1895664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 391 - 531
Target Start/End: Complemental strand, 1551606 - 1551467
Alignment:
Q  391 tgatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaaca 490  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||  |    
T  1551606 tgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaatta 1551507  T
Q  491 ctggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
    | ||||||||||||||||||  |||| ||||| ||||||||    
T  1551506 caggcaagcatccaacgaca-tccacaaaacccaccaacgt 1551467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 391 - 531
Target Start/End: Complemental strand, 17281952 - 17281813
Alignment:
Q  391 tgatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaaca 490  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||    
T  17281952 tgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatcaaatagtctgagacctacgaaaaacaaacaacca 17281853  T
Q  491 ctggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
    | || |||||| |||||| ||||||| ||||| ||||||||    
T  17281852 ccggaaagcat-caacgatacaccacaaaacccaccaacgt 17281813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 17282045 - 17281961
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17282045 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatccatcaccacc 17281961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 1895432 - 1895515
Alignment:
Q  321 tgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  1895432 tgaagtaccacaaa-ccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcaccacc 1895515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 322 - 405
Target Start/End: Complemental strand, 1551697 - 1551615
Alignment:
Q  322 gaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  1551697 gaagtaccacaaa-ccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatccatcaccacc 1551615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 17282358 - 17282293
Alignment:
Q  20 caaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17282358 caaacaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 17282293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 17375310 - 17375382
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  17375310 aaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatccatcaccacc 17375382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 395 - 531
Target Start/End: Original strand, 4869707 - 4869840
Alignment:
Q  395 ccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactgg 494  Q
    ||||||||||||||||||| | |||||  |||||||||| ||||||||||||||||| || ||||||||   || |||   |||||||||||| ||| |     
T  4869707 ccatcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagagaaaacgaatcaaatagt---agccccggtaaaaccaaacaaccaccga 4869803  T
Q  495 caagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
     |||||||||||| |||||||||||||  ||||||||    
T  4869804 gaagcatccaacgtcacaccacgaaacgcaccaacgt 4869840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 1895130 - 1895190
Alignment:
Q  25 accaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  1895130 accaccattagctctcctaagcaccttcatccaaaacaaacctcataaacaaccgcaaaag 1895190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 456 - 531
Target Start/End: Original strand, 4140576 - 4140650
Alignment:
Q  456 caaatagtctgagacccacgaaaaccaaacaaacactggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||| |||||| ||||||| ||||| ||||||||    
T  4140576 caaatagtctgagacccacgaaaaccaaagaaccaccggcaagcat-caacgatacaccacaaaacccaccaacgt 4140650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 1551988 - 1551922
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||    
T  1551988 ccaaacaccaccattagctctcctaagcaccttcatccaaaacacgcctcataaacaatcgcaaaag 1551922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 430 - 537
Target Start/End: Original strand, 34660352 - 34660456
Alignment:
Q  430 caccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactggcaagcatccaacgacacaccacgaaaccaaccaac 529  Q
    ||||||||| |||||||||||| || ||||||||   || || |  |||||||||||| ||| | |||||||||||||||||| ||||||||| ||||||    
T  34660352 caccacaactaagagagaaaacgaatcaaatagt---agccctaataaaaccaaacaaccaccgacaagcatccaacgacacatcacgaaacccaccaac 34660448  T
Q  530 gtttcaac 537  Q
    ||| ||||    
T  34660449 gttccaac 34660456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 3921314 - 3921380
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||| ||||||||| | |||||||||| | |||||||||||||||||||||||| ||||    
T  3921314 ccaaacaccaccattagctctcctgagcaccttcaccaaaaacacacctcataaacaaccgcaaaag 3921380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 452
Target Start/End: Complemental strand, 38531207 - 38531146
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctcca-ccacaaccaagagagaaaaca 452  Q
    ||||||||||||| |||||||||| |||||| |||||||| |||| ||||||| ||||||||    
T  38531207 gatccatcaccacatatgttgcgaacaaacaaaacctccatccaccaccaagaaagaaaaca 38531146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 34660319 - 34660351
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccat 365  Q
    |||||||||||||||||||||||||||||||||    
T  34660319 aaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 9e-44; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 393 - 531
Target Start/End: Original strand, 20740694 - 20740831
Alignment:
Q  393 atccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacact 492  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||     
T  20740694 atccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaataaca 20740793  T
Q  493 ggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
     |||||||||||||||||| |||| ||||| ||||||||    
T  20740794 tgcaagcatccaacgacac-ccacaaaacccaccaacgt 20740831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 392 - 516
Target Start/End: Original strand, 21881582 - 21881706
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacac 491  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||| || |||||||||||||| |||||||||||||||||  ||    
T  21881582 gatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagagaaaacgaatcaaatagtctgagagccacgaaaaccaaacaacgac 21881681  T
Q  492 tggcaagcatccaacgacacaccac 516  Q
     | ||||||||||||||||||||||    
T  21881682 cgacaagcatccaacgacacaccac 21881706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 20740611 - 20740683
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20740611 aaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatccatcaccacc 20740683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 21881500 - 21881572
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||||||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  21881500 aaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatccatcaccacc 21881572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 20740324 - 20740389
Alignment:
Q  20 caaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||| |||||| ||||||||| |||||||||||| |||||||||| ||||||||||| ||| ||||    
T  20740324 caaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaatcgcaaaag 20740389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 21881138 - 21881187
Alignment:
Q  20 caaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctca 69  Q
    |||| |||||| |||||||||  ||||||||||| |||||||||||||||    
T  21881138 caaacaccaccattagctctcccaagcaccttcacccaaaacacacctca 21881187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 394 - 537
Target Start/End: Original strand, 10408942 - 10409085
Alignment:
Q  394 tccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactg 493  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||| |||||||||| ||||||||| || |||      
T  10408942 tccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagagaaaaaatcaaatagtttgagacccacaaaaaccaaataaccacca 10409041  T
Q  494 gcaagcatccaacgacacaccacgaaaccaaccaacgtttcaac 537  Q
     |||||||||||||||||||||| ||||| ||||| || |||||    
T  10409042 acaagcatccaacgacacaccacaaaacccaccaatgtctcaac 10409085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 333 - 517
Target Start/End: Original strand, 5994663 - 5994870
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc----------------------tatgt 410  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||                      |||||    
T  5994663 aaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccaccatcatgatcgatccattagcactatgt 5994762  T
Q  411 tgcgagcaaacacaacctcca-ccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacactggcaagcatccaacgac 509  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||| ||| ||||| |||||||| ||    
T  5994763 tgcgagcaaacataacatccatccacaaccaagagagaaaacaaatcaaacagtttgaggcccacgaaaaccaaacaatcaccggcaaccatccaacaac 5994862  T
Q  510 acaccacg 517  Q
    ||||||||    
T  5994863 acaccacg 5994870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 10408858 - 10408930
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    |||||||||||||||||||| |||||||||||||  |  ||||||||||||||||||||||||||||||||||    
T  10408858 aaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatcaccacc 10408930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 6444151 - 6444213
Alignment:
Q  393 atccatcaccacctatgttgcgagcaaacacaacctcca-ccacaaccaagagagaaaacaaa 454  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||| ||||    
T  6444151 atccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaatcaaa 6444213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 406
Target Start/End: Original strand, 6444058 - 6444141
Alignment:
Q  322 gaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacct 406  Q
    ||||||||||||| ||||||||| ||||||| | |||||||||||  || ||||| ||||||  | || ||||||||||||||||    
T  6444058 gaagtaccacaaa-ccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatccatcaccacct 6444141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 392 - 531
Target Start/End: Original strand, 3302690 - 3302829
Alignment:
Q  392 gatccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaacaaaacaaatagtctgagacccacgaaaaccaaacaaacac 491  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||  || |||||||||||||| ||||||||||||||||| |||    
T  3302690 gatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagaggaaatgaatcaaatagtctgagatccacgaaaaccaaacaaccac 3302789  T
Q  492 tggcaagcatccaacgacacaccacgaaaccaaccaacgt 531  Q
        |||||||||| |||||||||||||||| | ||||||    
T  3302790 cactaagcatccaatgacacaccacgaaacccagcaacgt 3302829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 3302610 - 3302680
Alignment:
Q  335 accaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgatccatcaccacc 405  Q
    ||||| |||||||||||||||||||||| |||  |||| ||||||||| |||||||||||  |||||||||    
T  3302610 accaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcaccacc 3302680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 39020596 - 39020530
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    ||||| |||||| |||||||||  ||||||| ||| || |||||||||||||||| |||||| ||||    
T  39020596 ccaaacaccaccattagctctcccaagcaccctcaccctaaacacacctcataaagaaccgcaaaag 39020530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 43275667 - 43275727
Alignment:
Q  25 accaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaag 85  Q
    |||||| |||||||||  ||||||||||||||||||||||||||| ||| |||||| ||||    
T  43275667 accaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccgcaaaag 43275727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 18269795 - 18269763
Alignment:
Q  333 aaaccaacacaaccaaagatccatcgaaaccat 365  Q
    |||||||||||||||||||||||||||||||||    
T  18269795 aaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 18270112 - 18270063
Alignment:
Q  19 ccaaaaaccaccgttagctctcttaagcaccttcatccaaaacacacctc 68  Q
    ||||| |||||| |||||||||  ||||||||||| ||||||||||||||    
T  18270112 ccaaacaccacccttagctctcccaagcaccttcacccaaaacacacctc 18270063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 18269766 - 18269710
Alignment:
Q  395 ccatcaccacctatgttgcgagcaaacacaacctccaccacaaccaagagagaaaac 451  Q
    ||||||||||||||||| ||| || ||| |||||||| || || |||||||||||||    
T  18269766 ccatcaccacctatgtttcgatcagacataacctccatcataatcaagagagaaaac 18269710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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