View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_70 (Length: 249)
Name: NF17755_low_70
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 612232 - 612467
Alignment:
| Q |
13 |
tactatagaatggttctctttactatatgcctgaatcatgaatgtttgatatataccagctcattgatttatccagtttctttatgcatgcaactttggt |
112 |
Q |
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| T |
612232 |
tactatagaatggttctctttactatatgcctgaatcatgaatgtttgatatataccagctcattgatttatccggtttctttatgtatgcaactttggt |
612331 |
T |
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| Q |
113 |
cttttttcttataattgtgtcgagtatc---ctaatggccagatatcacacattttaaatatagaaaaacagggtgtttgaggttcgaacctgcatatat |
209 |
Q |
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| T |
612332 |
cttgtttcttataattctgtcaagtatccttctaatggtcagagatcacacattttaaatatagaaaaacagggtgtttgaggttcgaacctgcatatat |
612431 |
T |
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| Q |
210 |
ctttacatagctaaactcacgttactatattatatt |
245 |
Q |
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| T |
612432 |
ccttacagagctaaactcacgttactatattatatt |
612467 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 3350759 - 3350804
Alignment:
| Q |
154 |
atcacacattttaaatatagaaaaacagggtgtttgaggttcgaac |
199 |
Q |
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| T |
3350759 |
atcacacattttaaatgtagaaaaatagggtgtttggggttcgaac |
3350804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 31298657 - 31298701
Alignment:
| Q |
155 |
tcacacattttaaatatagaaaaacagggtgtttgaggttcgaac |
199 |
Q |
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| T |
31298657 |
tcacacattttaaatatagagaaataggatgtctgaggttcgaac |
31298701 |
T |
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