View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_77 (Length: 238)
Name: NF17755_low_77
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 612530 - 612750
Alignment:
| Q |
1 |
tatgagaggtgtgtgtatatttgagtcaaaaattatataattgtgttactcccatacgcaggcaaagagaaacaaactatttgaagaaaaacttgttttg |
100 |
Q |
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| T |
612530 |
tatgagaggtgtgtgtatatttgagtcaaaaattatataattgtgttactcccatacgcaggcaaagagaaacaaactatttgaagaaaaacttgttttg |
612629 |
T |
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| Q |
101 |
aagccgatcaaggagagattcattaaggttgtcatttccataacctttgatcgggattttgaacaagtttggaaaatgaggcaaagagcaatggattttc |
200 |
Q |
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| T |
612630 |
aagccgatcaaggagagattcattaaggttgtcatttccataacctttgatcgggattttgaacaagtttggaaaatgaggcaaagagcaatggattttc |
612729 |
T |
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| Q |
201 |
ttcgaaggccggtgcggagaa |
221 |
Q |
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| T |
612730 |
ttcgaaggccggtgcggagaa |
612750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 37477683 - 37477643
Alignment:
| Q |
110 |
aaggagagattcattaaggttgtcatttccataacctttga |
150 |
Q |
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| T |
37477683 |
aaggaaagattcatcaaggttgtcatttccataaccgttga |
37477643 |
T |
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