View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_79 (Length: 238)
Name: NF17755_low_79
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_79 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 9574134 - 9574355
Alignment:
| Q |
17 |
aaaagtagcaacataagtccctttgtgaagataatagcaaatcgataatgatagggaacatgtaagactggcacttgaccgtgagaaactttttcacaca |
116 |
Q |
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| T |
9574134 |
aaaagtagcaacgtaagtccctttgtgaagatgttagcaaatcgataatgatagggaacatgtaagactcgcacttgaccatgagaaactttttcacaca |
9574233 |
T |
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| Q |
117 |
agaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaatataccaaagtagc |
216 |
Q |
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| T |
9574234 |
agaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaatataccaaagtagc |
9574333 |
T |
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| Q |
217 |
ttttgtaaccggacaatgtagt |
238 |
Q |
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| T |
9574334 |
ttttgtaactggacaatgtagt |
9574355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 9565269 - 9565406
Alignment:
| Q |
17 |
aaaagtagcaacataagtccctttgtgaagataatagcaaatcgataatgatagggaacatgtaagactggcacttgaccgtgagaaactttttcacaca |
116 |
Q |
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|||||||||||| |||||| |||||||||||| |||||||||||||| || | | ||||||| ||||| ||||||||| | ||||||||||||| | || |
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| T |
9565269 |
aaaagtagcaacgtaagtctctttgtgaagatgttagcaaatcgataaggacatgaaacatgttagactcgcacttgactgggagaaactttttcgccca |
9565368 |
T |
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| Q |
117 |
agaagtgtatattcatttcaatgtatttggtgtgttat |
154 |
Q |
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| T |
9565369 |
agaagtgtatgttcatatcaatgtgtttggtgtgttat |
9565406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 8045304 - 8045214
Alignment:
| Q |
92 |
tgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagataca |
182 |
Q |
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| T |
8045304 |
tgaccgcgagtaactttttcccgcacaaagtgtatatcaatttcgatgtgtttggtgcgttgatgttgaactggattgtcggatagataca |
8045214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 28495210 - 28495288
Alignment:
| Q |
71 |
ggaacatgtaagactggcacttgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgt |
149 |
Q |
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| T |
28495210 |
ggaacatgtaatacatgcacctgaccgcgagcaacttcttcccacacaaagtgtatatccatttcaatgtgtttggtgt |
28495288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 29807619 - 29807697
Alignment:
| Q |
71 |
ggaacatgtaagactggcacttgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgt |
149 |
Q |
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| T |
29807619 |
ggaacatgtaatacatgcacctgaccgcgagcaacttcttcccacacaaagtgtatatccatttcaatgtgtttggtgt |
29807697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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