View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_8 (Length: 621)
Name: NF17755_low_8
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 187 - 604
Target Start/End: Complemental strand, 29376726 - 29376309
Alignment:
| Q |
187 |
ttattaacatcataatcactgacaagtttgtttccaatcttatacaaaaattctagccaattccatataatgagccaatttgttaatttagtttaacttt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29376726 |
ttattaacatcataatcactgacaagtttgtttccaatttcatacaaaaattctagctaattccatataatgagccaatttgttaatttagtttaacttt |
29376627 |
T |
|
| Q |
287 |
tttgtttatcactttcaaacaaagcctaaaacannnnnnnnaagaagttaaattagcctacataaattgatgtcaaatggaatcaaacccgagactttga |
386 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||| |||||||| | |
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| T |
29376626 |
tttgtttatcattttcaaacaaagcctaaaacattttttt-aagaagttaaattagcccacctaaattgatgtcgaatggaatcaaacctgagactttaa |
29376528 |
T |
|
| Q |
387 |
agaggagcactctcaaatcccaaatcaataccaacaggttaacccaagtgggttaaccaagcctaaaactgattccctatgttttgcaattnnnnnnnct |
486 |
Q |
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||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29376527 |
agaggagcactctcagatcccaagtcaataccaacagattaacccaagtgggttaaccaagcctaaaactgattccctatgttttgcaattaaaaaaact |
29376428 |
T |
|
| Q |
487 |
caatttctgtcctctttc-ttttctttcttatcttattccctttatctactactactactataagaaaatcatatgcaacaaaatttcatagttatcctt |
585 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29376427 |
caatttctgtcctctttctttttctttcttatcttattccctttatctaccactactactataaaaaaatcatatgcaacaaaatttcatagttatcctt |
29376328 |
T |
|
| Q |
586 |
ggttaaactaattctctat |
604 |
Q |
| |
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||||||||||||||||||| |
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| T |
29376327 |
ggttaaactaattctctat |
29376309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 535 - 600
Target Start/End: Complemental strand, 29376263 - 29376198
Alignment:
| Q |
535 |
ctactactactataagaaaatcatatgcaacaaaatttcatagttatccttggttaaactaattct |
600 |
Q |
| |
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|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||| |
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| T |
29376263 |
ctactactactataagaaaatcgtacgcatcaaaatttcatagttatccttggttaaaccaattct |
29376198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 442
Target Start/End: Original strand, 23361655 - 23361727
Alignment:
| Q |
372 |
aacccgagactttgaagaggagcactctc--aaatcccaaatcaataccaacaggttaacccaagtgggttaa |
442 |
Q |
| |
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|||| ||||| |||| ||||||||| ||| | ||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
23361655 |
aacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgggttaa |
23361727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 42114547 - 42114403
Alignment:
| Q |
17 |
atagaagatataacttatcttcttgaat-agtcctttttgctgacagttcagttcatgcagtgttggtttctaccaaatggctaagattgctgttactcc |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42114547 |
atagaagatataacttatcttcttgaattagtcctttttgctgacagttcagttcatgcagtgttggtttctaccaaatggctaagattgctgttactcc |
42114448 |
T |
|
| Q |
116 |
aacaattgttctggcagagttcatactttttagaaaaactatttc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42114447 |
aacaattgttctggcagagttcatactttttagaaaaactatttc |
42114403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 17155898 - 17155845
Alignment:
| Q |
366 |
gaatcaaacccgagactttgaagaggagcactctcaaatcccaaatcaatacca |
419 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||| ||||||| |||||||| |
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| T |
17155898 |
gaatcaaacctgagaccttgaggaggagcactctcaggtcccaaaccaatacca |
17155845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 594
Target Start/End: Original strand, 20706504 - 20706564
Alignment:
| Q |
535 |
ctactactactataagaaaatcata-tgcaacaaaatttcatagttatccttggttaaact |
594 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||||||||||||||||||||| ||||||||| |
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|
| T |
20706504 |
ctactactactgtaagaaaatcacactccaacaaaatttcatagttatcctcggttaaact |
20706564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 594
Target Start/End: Original strand, 20874548 - 20874608
Alignment:
| Q |
535 |
ctactactactataagaaaatcata-tgcaacaaaatttcatagttatccttggttaaact |
594 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||||||||||||||||||||| ||||||||| |
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| T |
20874548 |
ctactactactgtaagaaaatcacactccaacaaaatttcatagttatcctcggttaaact |
20874608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 596
Target Start/End: Original strand, 21690806 - 21690837
Alignment:
| Q |
565 |
caaaatttcatagttatccttggttaaactaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
21690806 |
caaaatttcatagttatccttggttaaactaa |
21690837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 598
Target Start/End: Original strand, 21665265 - 21665377
Alignment:
| Q |
485 |
ctcaatttctgtcctctttcttttctttcttatcttattccctttatctactactactactataagaaaatcatatgcaa--caaaatttcatagttatc |
582 |
Q |
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|
|||||||| | || ||||| || |||||||||||||||||| ||||| ||| | ||||||||||||||||||| | | |||| || ||||||||| |
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| T |
21665265 |
ctcaatttatttcttctttattctctttcttatcttattccatttat---ctattgctactataagaaaatcatactctagcaaaaaatttatagttatc |
21665361 |
T |
|
| Q |
583 |
cttggttaaactaatt |
598 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
21665362 |
ctcggttaaactaatt |
21665377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 16893440 - 16893391
Alignment:
| Q |
394 |
cactctcaaatcccaaatcaataccaacaggttaacccaagtgggttaac |
443 |
Q |
| |
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||||| |||||| ||| |||||||||||||| ||||||||||||||||| |
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| T |
16893440 |
cactcccaaatctcaagccaataccaacaggtcaacccaagtgggttaac |
16893391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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