View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_84 (Length: 236)
Name: NF17755_low_84
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_84 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 1880987 - 1880784
Alignment:
| Q |
19 |
atatttgtaactgttgaaaaagtttaaattttatatttgttaccatcttcaacagataaattannnnnnnaatttcacatgtgcaaatttaattcaatat |
118 |
Q |
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| T |
1880987 |
atatttgtaactgttgaaaaagtttaaattttatatttgttaccatcttcaacagataaattatttttttaatttcacatgtgcaaatttaattcaatat |
1880888 |
T |
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| Q |
119 |
ttttaatctggcccaatggggtaacctgaccaaggattcagagggtcgacctagtgctaccatgttcgatttatgcacagttgaataatcttacgttgtc |
218 |
Q |
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| T |
1880887 |
ttttaatctggcccaatggggtaacctgaccaaggattcagagggtcgacctagtgctaccatgttcgatttatgcacagttgaataatcttacgttgtc |
1880788 |
T |
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| Q |
219 |
aatg |
222 |
Q |
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|||| |
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| T |
1880787 |
aatg |
1880784 |
T |
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