View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_85 (Length: 235)
Name: NF17755_low_85
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_85 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 5215983 - 5216203
Alignment:
| Q |
15 |
tttaatacatatttccttctttaatttcatttccattatcatctcaagatatttggaacgctcgttgtatatatgacacttattatcattgctgcaagac |
114 |
Q |
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| T |
5215983 |
tttaatacatatttccttctttaatttcatttccattatcatctcaagatatttggaacgctcgttgtatatatgacacttattatcattgctgcaagac |
5216082 |
T |
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| Q |
115 |
agtggaaaaacctaattccctgttttcataattctacaataccacagaaaactgagtcttgcatttcagatttcgttttgctatatatatgcaacaaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5216083 |
agtggaaaaacctaattccctgttttcataattctacaataccacagaaaactgagtcttgcatttcagatttcgttttgctatatatatgcaacaaaca |
5216182 |
T |
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| Q |
215 |
acacttgtctttccactttcc |
235 |
Q |
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||||||||||||||||||||| |
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| T |
5216183 |
acacttgtctttccactttcc |
5216203 |
T |
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