View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_86 (Length: 227)
Name: NF17755_low_86
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_86 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 221155 - 221362
Alignment:
| Q |
9 |
actattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctcggaaatacaagtcaatgaatactttatataattatacaaa |
108 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
221155 |
actattattattctccc--gcgtcgtgcgaaaatcctaatgccattgccaacaaattctcggaaatacaagtcaatgaatactttatataattatacaaa |
221252 |
T |
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| Q |
109 |
gtagactcaactatcaagatagtcaatgaattattattctcttttatttttaaagataatgatgaactaaagtctaaattgatgaattaatgatagttta |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
221253 |
gta---------atcaagatagtcaatgaattattattctcttttatttttaaagataatgatgaactaaagtctaaattgatgaattaatgatagttta |
221343 |
T |
|
| Q |
209 |
tggactatttatttagtat |
227 |
Q |
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||||||||||||||||||| |
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| T |
221344 |
tggactatttatttagtat |
221362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 690310 - 690517
Alignment:
| Q |
9 |
actattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctcggaaatacaagtcaatgaatactttatataattatacaaa |
108 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
690310 |
actattattattctccc--gcgtcgtgcgaaaatcctaatgccattgccaacaaattctcggaaatacaagtcaatgaatactttatataattatacaaa |
690407 |
T |
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| Q |
109 |
gtagactcaactatcaagatagtcaatgaattattattctcttttatttttaaagataatgatgaactaaagtctaaattgatgaattaatgatagttta |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
690408 |
gta---------atcaagatagtcaatgaattattattctcttttatttttaaagataatgatgaactaaagtctaaattgatgaattaatgatagttta |
690498 |
T |
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| Q |
209 |
tggactatttatttagtat |
227 |
Q |
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||||||||||||||||||| |
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| T |
690499 |
tggactatttatttagtat |
690517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 734778 - 734985
Alignment:
| Q |
9 |
actattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctcggaaatacaagtcaatgaatactttatataattatacaaa |
108 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
734778 |
actattattattctccc--gcgtcgtgcgaaaatcctaatgccattgccaacaaattctcggaaatacaagtcaatgaatactttatataattatacaaa |
734875 |
T |
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| Q |
109 |
gtagactcaactatcaagatagtcaatgaattattattctcttttatttttaaagataatgatgaactaaagtctaaattgatgaattaatgatagttta |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
734876 |
gta---------atcaagatagtcaatgaattattattctcttttatttttaaagataatgatgaactaaagtctaaattgatgaattaatgatagttta |
734966 |
T |
|
| Q |
209 |
tggactatttatttagtat |
227 |
Q |
| |
|
||||||||||||||||||| |
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| T |
734967 |
tggactatttatttagtat |
734985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 858674 - 858881
Alignment:
| Q |
9 |
actattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctcggaaatacaagtcaatgaatactttatataattatacaaa |
108 |
Q |
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|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
858674 |
actattattattctccc--gcgtcgtgcgaaaatcctaatgccattgccaacaaattctcggaaatacaagtcaatgaatactttatataattatacaaa |
858771 |
T |
|
| Q |
109 |
gtagactcaactatcaagatagtcaatgaattattattctcttttatttttaaagataatgatgaactaaagtctaaattgatgaattaatgatagttta |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
858772 |
gta---------atcaagatagtcaatgaattattattctcttttatttttaaagataatgatgaactaaagtctaaattgatgaattaatgatagttta |
858862 |
T |
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| Q |
209 |
tggactatttatttagtat |
227 |
Q |
| |
|
||||||||||||||||||| |
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| T |
858863 |
tggactatttatttagtat |
858881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 218849 - 218909
Alignment:
| Q |
8 |
tactattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctc |
68 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
218849 |
tactattattattctctctcgtgtcgtgcgaaaatcctaatgccattgtcaacaaattctc |
218909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 695409 - 695469
Alignment:
| Q |
8 |
tactattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctc |
68 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
695409 |
tactattattattctctctcgtgtcgtgcgaaaatcctaatgccattgtcaacaaattctc |
695469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 699618 - 699678
Alignment:
| Q |
8 |
tactattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctc |
68 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
699618 |
tactattattattctctctcgtgtcgtgcgaaaatcctaatgccattgtcaacaaattctc |
699678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 732472 - 732532
Alignment:
| Q |
8 |
tactattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctc |
68 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
732472 |
tactattattattctctctcgtgtcgtgcgaaaatcctaatgccattgtcaacaaattctc |
732532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 856368 - 856428
Alignment:
| Q |
8 |
tactattattattctctctcgcgtcgtgcgaaaatcctaatgccattgccaacaaattctc |
68 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
856368 |
tactattattattctctctcgtgtcgtgcgaaaatcctaatgccattgtcaacaaattctc |
856428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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