View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_87 (Length: 225)
Name: NF17755_low_87
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_87 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 12244249 - 12244053
Alignment:
| Q |
19 |
tattgcatacagtaatttgtgtatctccagatccagctagaaaggaaatgcatgaagcatgttttgattatt-aagccttggaggtgttttctcagatgg |
117 |
Q |
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| T |
12244249 |
tattgcatacagtaatttgtgtatctccagatccagctagaaaggaaatgcgtgaagcatgtttcgattatttaagccttggaggtgatttctcagatgg |
12244150 |
T |
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| Q |
118 |
accattagctctactcgcaggtctaaattctcgtccattgagtttgatttaccatttcattggtgttgctacatatggtctagttcgtctgatgatg |
214 |
Q |
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| T |
12244149 |
accaatagctctactcgcagggctaaattctcgtccattgagtttgctttaccatttcattggtgttgctacatatggtctagttcgtctaatgatg |
12244053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 12317729 - 12317835
Alignment:
| Q |
108 |
tctcagatggaccattagctctactcgcaggtctaaattctcgtccattgagtttgatttaccatttcattggtgttgctacatatggtctagttcgtct |
207 |
Q |
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| T |
12317729 |
tctcagatggaccaatagctctactcgcaggtctaaattctcgtccattgagtttgctttaccatttcattggtgttgctacatatggtctagttcgtct |
12317828 |
T |
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| Q |
208 |
gatgatg |
214 |
Q |
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|||||| |
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| T |
12317829 |
aatgatg |
12317835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 12409820 - 12409976
Alignment:
| Q |
41 |
atctccagatccagctagaaaggaaatgcatgaagcatgttttgattatt-aagccttggaggtgttttctcagatggaccattagctctactcgcaggt |
139 |
Q |
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| T |
12409820 |
atctccagatccagctagaaaggaaatgcgtgaagcatgtttcaattatttaagtcttggaggtgttttctcagatgaaccaattgctctactcgcaggt |
12409919 |
T |
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| Q |
140 |
ctaaattctcgtccattgagtttgatttaccatttcattggtgttgctacatatggt |
196 |
Q |
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| T |
12409920 |
cttaattctagttcatcgactttgttgtatcatttcattgcggtggctgcatatggt |
12409976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 23479147 - 23479063
Alignment:
| Q |
76 |
catgttttgattatta-agccttggaggtgttttctcagatggaccattagctctactcgcaggtctaaattctcgtccattgag |
159 |
Q |
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| T |
23479147 |
catgttttgattatttgagccttggaggtgtttgctcagacggaccaatagctctactctccggtctgaattcgcgtccattgag |
23479063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 36745762 - 36745636
Alignment:
| Q |
34 |
tttgtgtatctccagatccagctagaaaggaaatgcatgaagcatgttttgattatta-agccttggaggtgttttctcagatggaccattagctctact |
132 |
Q |
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| T |
36745762 |
tttgtgcatctcctgatccagctagcattgaaatgcgccgagcatgttttgattatttgagcctcggaggtgtttgctcagatgggccaatagctctact |
36745663 |
T |
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| Q |
133 |
cgcaggtctaaattctcgtccattgag |
159 |
Q |
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| T |
36745662 |
ctccggtctgaatccgcgtccattgag |
36745636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 7984457 - 7984331
Alignment:
| Q |
34 |
tttgtgtatctccagatccagctagaaaggaaatgcatgaagcatgttttgattatta-agccttggaggtgttttctcagatggaccattagctctact |
132 |
Q |
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|||||| |||||| ||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||| |
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| T |
7984457 |
tttgtgcatctcctgatccagctagcattgaaatgctccgagcatgttttgattatttgagccttggaggtgtttgctcagacggaccaatagctctact |
7984358 |
T |
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| Q |
133 |
cgcaggtctaaattctcgtccattgag |
159 |
Q |
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| T |
7984357 |
ctccggtttgaatccgcgtccattgag |
7984331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 13208142 - 13208268
Alignment:
| Q |
34 |
tttgtgtatctccagatccagctagaaaggaaatgcatgaagcatgttttgattatta-agccttggaggtgttttctcagatggaccattagctctact |
132 |
Q |
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| T |
13208142 |
tttgtgcatctcctgatccagctagcattgaaatgcaccgagcatgttttaattatttgagccttggaggtgtttgctcatacggaccaatagctctact |
13208241 |
T |
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| Q |
133 |
cgcaggtctaaattctcgtccattgag |
159 |
Q |
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| | |||| ||| | ||||||||||| |
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| T |
13208242 |
ctccagtctgaatccgcgtccattgag |
13208268 |
T |
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