View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_9 (Length: 620)
Name: NF17755_low_9
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 210 - 595
Target Start/End: Original strand, 16060477 - 16060866
Alignment:
| Q |
210 |
aatggacaagacctttgaatgaaatggatattaaaatatatgtataacctgattgatatgaggatcgacaacatccaatgtatatcgaggtcaagggaaa |
309 |
Q |
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| T |
16060477 |
aatggacaagacctttgaatgaaatggatattaaaatatatg-----cctgattgatatgaggatcgacaacatcaaatgtatatcgaggtcacgggaaa |
16060571 |
T |
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| Q |
310 |
gaagcatata------agactagcaattggt---gatatttattgttgtgtgcattttctaagaaaaatggaaaacatgttaaagttcttacttcaaatt |
400 |
Q |
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| T |
16060572 |
gaagcatatatatataagactagcaatcggtaatgatatttactgttgtgtgcattttctaagaaaaaaggaaaacatgttaaagttcttactccaaatt |
16060671 |
T |
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| Q |
401 |
tgtagaggtacaattgttgtcggttctagatgtaaacatcataattccattactagattcacattttgcaagaaacatttgtgcaatgctaccacaaaca |
500 |
Q |
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| T |
16060672 |
tgtagaggtacaattgttgttggttctagatgtaaacatcataattccattactagattcacattttgcaagaaacatctgtgcaacgctaacacaaaca |
16060771 |
T |
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| Q |
501 |
agtgctcaaattcaaactttcgtacattcaaatagaaagctgaagaaacttgaaatggttcaaagagtcggatttgaaatgatttggtgtcggaa |
595 |
Q |
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| T |
16060772 |
agtgctcaaattcaaactttcgtacattgaaatggaaagctgaagaaacttgaaatggttcaaagagttggatttgagacaatttggtgttggaa |
16060866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 16060244 - 16060442
Alignment:
| Q |
19 |
ctcaactatatatattattacgaattgctaggctcatgcactgtcttcccttggattagatatatgcttaacattgtcgatccttggttccatctttagt |
118 |
Q |
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| T |
16060244 |
ctcaactgtatatattattacgaattgctaggctcatacactgtcttcccttggattagatatacgcttgacattgtcgatccttggttccatctttagt |
16060343 |
T |
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| Q |
119 |
agcagtttcttcaaatattttaatatccattttattcaaaggtcttgatattgttccattgctcaagaatgactc--atggaacaatatcttaaatgga |
215 |
Q |
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| T |
16060344 |
agcagtttcttcaaatattttaatacccatttaattcaaaggtcttgatattgttccattgctcaagaatgactcatatggaacaatatctcaaatgga |
16060442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 16074200 - 16074316
Alignment:
| Q |
35 |
attacgaattgctaggctcatgcactgtcttcccttggattagatatatgcttaacattgtcgatccttggttccatctttagtagcagtttcttcaaat |
134 |
Q |
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| T |
16074200 |
attacgaattgctagtctaatacactgccttcccttgtatatgatatacgcttgacattgttgaccctccgtaccatccttagtatctggttctacaaat |
16074299 |
T |
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| Q |
135 |
attttaatatccatttt |
151 |
Q |
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| T |
16074300 |
attttaatatccatttt |
16074316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 16062805 - 16062921
Alignment:
| Q |
35 |
attacgaattgctaggctcatgcactgtcttcccttggattagatatatgcttaacattgtcgatccttggttccatctttagtagcagtttcttcaaat |
134 |
Q |
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| T |
16062805 |
attacgaattgctagtctaatacactgccttcccttgtatatgatatacgcttgacattgttgaccctccgaaccatccttagtatctggttctacaaat |
16062904 |
T |
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| Q |
135 |
attttaatatccatttt |
151 |
Q |
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| T |
16062905 |
attttaatatccatttt |
16062921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 433
Target Start/End: Original strand, 16097687 - 16097776
Alignment:
| Q |
341 |
tattgttgtgtgcattttctaagaaaaatggaaaacatgttaaagttcttacttcaaatttgtagaggtacaattgttgtcggttctagatgt |
433 |
Q |
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||||||||||||||||| |||||||| |||||| |||||||| |||||||||| |||| ||||||||||||| ||| ||||| |||||| |
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| T |
16097687 |
tattgttgtgtgcatttcttaagaaaa--ggaaaaaatgttaaaattcttacttc-aattattagaggtacaattattgatggttcaagatgt |
16097776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 464 - 584
Target Start/End: Complemental strand, 16062676 - 16062557
Alignment:
| Q |
464 |
ttttgcaagaaacatttgtgcaatgctaccacaaacaagtgctcaaattcaaactttcgtacattcaaatagaaagctgaagaaacttgaaatggttcaa |
563 |
Q |
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||||||| ||||||||||||||| ||| || |||||| | ||||||| ||| |||| ||||||||| |||||||||||||| ||| |||||||| | |
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| T |
16062676 |
ttttgcatgaaacatttgtgcaacgctgacatgaacaagagttcaaattaaaa-tttcatacattcaataggaaagctgaagaaaattgcaatggttcga |
16062578 |
T |
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| Q |
564 |
agagtcggatttgaaatgatt |
584 |
Q |
| |
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|||| | ||||| ||||||| |
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| T |
16062577 |
agagccaaatttgcaatgatt |
16062557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 464 - 584
Target Start/End: Complemental strand, 16074071 - 16073952
Alignment:
| Q |
464 |
ttttgcaagaaacatttgtgcaatgctaccacaaacaagtgctcaaattcaaactttcgtacattcaaatagaaagctgaagaaacttgaaatggttcaa |
563 |
Q |
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||||||| ||||||||||||||| ||| || |||||| ||||||||| ||| |||| ||||||||| |||||||||||||| || |||||||| | |
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| T |
16074071 |
ttttgcaggaaacatttgtgcaacgctgacatgaacaagagctcaaatt-aaaatttcatacattcaataggaaagctgaagaaaattacaatggttcga |
16073973 |
T |
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| Q |
564 |
agagtcggatttgaaatgatt |
584 |
Q |
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|||| | ||||| ||||||| |
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| T |
16073972 |
agagccaaatttgtaatgatt |
16073952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 16074959 - 16075013
Alignment:
| Q |
405 |
gaggtacaattgttgtcggttctagatgtaaacatcataattccattactagatt |
459 |
Q |
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| T |
16074959 |
gaggtacaattggtgttggctctagatgtaggcatcataattccgttactagatt |
16075013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 16060515 - 16060483
Alignment:
| Q |
133 |
atattttaatatccattttattcaaaggtcttg |
165 |
Q |
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| T |
16060515 |
atattttaatatccatttcattcaaaggtcttg |
16060483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 55446697 - 55446819
Alignment:
| Q |
57 |
cactgtcttcccttggattagatatatgcttaacattgtcgatccttggttccatctttagtagcagtttcttcaaatattttaatatccattttattca |
156 |
Q |
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||||| ||||||||||||| || |||||||| ||||||||||||| | || || |||| | || ||||||| |||||| || | || ||| || || |
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| T |
55446697 |
cactgccttcccttggattcgacatatgcttgacattgtcgatccaaaatcccttccttagcatcatgttcttcagatatttgaacaaccgtttcatcca |
55446796 |
T |
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| Q |
157 |
aaggtcttgatattgttccattg |
179 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
55446797 |
aaggccttgatattgttccattg |
55446819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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