View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_90 (Length: 216)
Name: NF17755_low_90
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_90 |
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Alignment Details
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 27796555 - 27796621
Alignment:
| Q |
17 |
caaaggtgtgaatgtgtatgatttgtaatgagacaaaaaagtaagtgaaatagagaggaaatatgag |
83 |
Q |
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| T |
27796555 |
caaaggtgtgaatgtgtatgatttgtaatgagacaaaaaagtaagtgaaatagagaggaaatatgag |
27796621 |
T |
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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 27796697 - 27796737
Alignment:
| Q |
159 |
atatcatacttctcctcaagcttttgaaatagcctccatgc |
199 |
Q |
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| T |
27796697 |
atatcatacttctcctcaagcttttgaaatagcctccatgc |
27796737 |
T |
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