View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_93 (Length: 212)
Name: NF17755_low_93
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_93 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 24890637 - 24890689
Alignment:
| Q |
145 |
agtaataattttttaggaagaatgtttgtcaccaaaatatggttagaacacag |
197 |
Q |
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| T |
24890637 |
agtaataattttttaggaagaatgtttgtcaccaaaatatggttagaacacag |
24890689 |
T |
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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 24991909 - 24992013
Alignment:
| Q |
80 |
aatttgagaattccactggaaaccaattagtaagtcttttggtctccttgttcaccttctgttatagtaataattttttaggaagaatgtttgtcaccaa |
179 |
Q |
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| T |
24991909 |
aatttgagaatttcaccggaaaccagttagaaagtcttttgttctccttgtccacctcctgtttcagaaattatttattaggaagaatatttgtcaccaa |
24992008 |
T |
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| Q |
180 |
aatat |
184 |
Q |
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||||| |
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| T |
24992009 |
aatat |
24992013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 24916068 - 24916172
Alignment:
| Q |
80 |
aatttgagaattccactggaaaccaattagtaagtcttttggtctccttgttcaccttctgttatagtaataattttttaggaagaatgtttgtcaccaa |
179 |
Q |
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| T |
24916068 |
aatttgagaatttcaccggaaaccagttagaaagtcttctgttctccttgtccacctcctgtttcagaaattatttattaggaagaatatttgtcaccaa |
24916167 |
T |
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| Q |
180 |
aatat |
184 |
Q |
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||||| |
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| T |
24916168 |
aatat |
24916172 |
T |
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Target: scaffold0099 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 28421 - 28507
Alignment:
| Q |
97 |
ggaaaccaattagtaagtcttttggt-ctccttgttcaccttctgttatagtaataatttt-ttaggaagaatgtttgtcaccaaaa |
181 |
Q |
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| T |
28421 |
ggaaaccagttagaaagtctttttgttctccttgtccacctcctgtttcagaaattattttattaggaagaatatttgtcaccaaaa |
28507 |
T |
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