View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_low_96 (Length: 206)
Name: NF17755_low_96
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 49463322 - 49463491
Alignment:
| Q |
15 |
aattctcgggcctatattttgagataagactcggtgataaacacttacgaagttgtcattcgtgataagctgcaagagtataaacaaatgataaaactat |
114 |
Q |
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| T |
49463322 |
aattctcgggcctatattatgagataagactcggtgataaacacttacgaagttgtcattcgtgataagctgcaagagtataaacaaatgataaaactat |
49463421 |
T |
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| Q |
115 |
taccataaactttcaacgaaagacaatcaatgattttgattttagtgatgatttctattcaacaactgta |
184 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49463422 |
taccataaactttcaacaaaagacaatcaatgattttgattttagtgatgatttctattcaacaactgta |
49463491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 13014951 - 13014825
Alignment:
| Q |
31 |
ttttgagataagactcggtgataaacacttacgaagttgtcattcgtgataagctgcaagagtataaacaaatgataaaactattaccataaactttcaa |
130 |
Q |
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| T |
13014951 |
ttttgtgataatactcggtgaaaaacacttacaaacttgtcatttgcgataagttgtaagaatataca-aaatgataaaattattaccacaaactttcaa |
13014853 |
T |
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| Q |
131 |
cga--aagacaatcaatgattttgatttt |
157 |
Q |
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| T |
13014852 |
tgatgaaga-aatcaatgattttgttttt |
13014825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 1095009 - 1094892
Alignment:
| Q |
15 |
aattctcgggcctatattttgagataagactcggtgataaacacttacgaagttgtcattcgtgataagctgcaaga--gtataaacaaatgataaaact |
112 |
Q |
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| T |
1095009 |
aattctcgggcctatgttttgtgataagactcggtgaaaaacacttacaaacttgtcatttgtgataagctgcaagagtgtataaaaaaatgataaaact |
1094910 |
T |
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| Q |
113 |
attaccataaactttcaa |
130 |
Q |
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||||||| |||||||||| |
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| T |
1094909 |
attaccacaaactttcaa |
1094892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 19847029 - 19846917
Alignment:
| Q |
15 |
aattctcgggcctatattttgagataagactcggtgataaacacttacgaagttgtcattcgtgataagctgcaagagtataaacaaatgataaaactat |
114 |
Q |
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|||||| |||||||| ||| | |||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||| | ||||||||||| | | |
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| T |
19847029 |
aattcttgggcctatgtttggtgataagactcggtgatgaacacttacaaacttgtcatttgtgataagctgcaagagtatacaaaaatgataaaattgt |
19846930 |
T |
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| Q |
115 |
taccataaacttt |
127 |
Q |
| |
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|| || ||||||| |
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| T |
19846929 |
taacacaaacttt |
19846917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 19891992 - 19891909
Alignment:
| Q |
15 |
aattctcgggcctatattttgagataagactcggtgataaacacttacgaagttgtcattcgtgataagctgcaagagtataaa |
98 |
Q |
| |
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|||||| ||||| || || || |||||||||||||||||||||||||| || ||||||| | |||||||||||| ||||||| |
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| T |
19891992 |
aattcttgggccaatgttctgtgataagactcggtgataaacacttacaaacctgtcatttgagataagctgcaaccgtataaa |
19891909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 29464846 - 29464717
Alignment:
| Q |
31 |
ttttgagataagactcggtgataaacacttacgaagttgtcattcgtgataagctgcaagagtat--aaacaaatgataaaactattaccataaactttc |
128 |
Q |
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||||| |||||||||||||| |||||||||| || |||||||| | ||||||||||| |||| ||| |||||| |||||| | |||| |||||||| |
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| T |
29464846 |
ttttgtgataagactcggtgtaaaacacttacaaacttgtcatttgagataagctgcataggtatacaaaaaaatgacaaaactgtcaccacaaactttc |
29464747 |
T |
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| Q |
129 |
aacga--aagacaatcaatgattttgatttt |
157 |
Q |
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|| || |||| ||||||||||||| ||||| |
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| T |
29464746 |
aatgatgaaga-aatcaatgattttaatttt |
29464717 |
T |
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