View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_high_13 (Length: 244)
Name: NF17756_high_13
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 4243932 - 4244144
Alignment:
| Q |
19 |
ctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgttggcgcccact |
118 |
Q |
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| T |
4243932 |
ctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgtcggcgcccact |
4244031 |
T |
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| Q |
119 |
acgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244032 |
acgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatg |
4244131 |
T |
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| Q |
219 |
aaaacagctagaa |
231 |
Q |
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||||||||||||| |
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| T |
4244132 |
aaaacagctagaa |
4244144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 6186988 - 6187198
Alignment:
| Q |
19 |
ctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgttggcgcccact |
118 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | | || ||||| |
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| T |
6186988 |
ctacgaacaatccatcagccggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcaaatatagatacctttagccgacgaccact |
6187087 |
T |
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| Q |
119 |
acgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatg |
218 |
Q |
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| T |
6187088 |
tcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttgttttgtttgaagttgcttattgatgacatcgaaataacgatg |
6187187 |
T |
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| Q |
219 |
aaaacagctag |
229 |
Q |
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||||||||||| |
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| T |
6187188 |
aaaacagctag |
6187198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 6170064 - 6170129
Alignment:
| Q |
41 |
tacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttg |
106 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||| || || || |||| |||||| |
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| T |
6170064 |
tacttgatcaccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttg |
6170129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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