View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_high_16 (Length: 222)
Name: NF17756_high_16
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_high_16 |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 2755269 - 2755478
Alignment:
| Q |
13 |
agataccaactgcaaccattaaaataaaatggtgaattagtgacaacaaagaatacataactttacactataggctgaacaaagaaaatttggccaataa |
112 |
Q |
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| T |
2755269 |
agataccaactgcaaccattaaaataaaatggtgaattaatgacaacaaagaatacataactttacactataggctgaacaaagaaaatttggccaataa |
2755368 |
T |
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| Q |
113 |
attactgatgaagattgtagtaaatatagaaacttgatagaagcgcatacctaataccgacaactttcttgaaatcatcttcaagcgcacggttcatgta |
212 |
Q |
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| T |
2755369 |
attactgatgaagattgtagtaaatatagaaacttgatagaagcgcatacctaataccgacaactttcttgaaatcatcttcaagcgcacggttcatgta |
2755468 |
T |
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| Q |
213 |
cttgtgaaaa |
222 |
Q |
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|||||||||| |
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| T |
2755469 |
cttgtgaaaa |
2755478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 2747210 - 2747304
Alignment:
| Q |
13 |
agataccaactgcaaccattaaaataaaatggtgaattagtgacaacaaagaatacataactttacactataggctgaacaaagaaaatttggcc |
107 |
Q |
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| T |
2747210 |
agataccaactgcaaccattaaaataaaatggtgagttagtgacaagagagaatcaacaacattacaatataagttgcacaaagaaaatttggcc |
2747304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 2747365 - 2747429
Alignment:
| Q |
158 |
catacctaataccgacaactttcttgaaatcatcttcaagcgcacggttcatgtacttgtgaaaa |
222 |
Q |
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| T |
2747365 |
catacctaataccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaa |
2747429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 55322323 - 55322270
Alignment:
| Q |
169 |
ccgacaactttcttgaaatcatcttcaagcgcacggttcatgtacttgtgaaaa |
222 |
Q |
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| T |
55322323 |
ccgacaacttgcttgaaatcatcttcaagggcacgaatcatgtacttgtgaaaa |
55322270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 34227446 - 34227365
Alignment:
| Q |
138 |
atagaaacttgatagaagcgcatacctaataccgacaactttcttga----aatcatcttcaagcgcacggttcatgtactt |
215 |
Q |
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| T |
34227446 |
atagaagcttgacagaagcagataccttataccaacaactttcttgatatcattcatcttcaagtgcacagttcatgtactt |
34227365 |
T |
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