View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_high_18 (Length: 206)
Name: NF17756_high_18
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 25928246 - 25928394
Alignment:
| Q |
20 |
atatatggagaaatgttcattgcatt----ccccaaaggatcacatttaagaaaagtgcaagagttcaagtcatatttgaaattcgaagcaaagtaaatg |
115 |
Q |
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| T |
25928246 |
atatatggagaaatgt-cattgcattcattccccaaaggatcacatttaagaaaagtgcaagagttcaagtcatatttgaaattcgaagcaaagtaaatg |
25928344 |
T |
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| Q |
116 |
ccaacaagtgttattacggagtcaattttagtgggctaatttactttctt |
165 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25928345 |
ccaacaagtgttattacggagtcaattttagtgggttaatttactttctt |
25928394 |
T |
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