View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17756_high_4 (Length: 572)
Name: NF17756_high_4
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 3 - 570
Target Start/End: Complemental strand, 52953493 - 52952926
Alignment:
| Q |
3 |
aaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52953493 |
aaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcagaagatttctcacaagaatg |
52953394 |
T |
|
| Q |
103 |
acccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttg |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953393 |
acccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttg |
52953294 |
T |
|
| Q |
203 |
ggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctgagtataagtgaaactt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953293 |
ggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctgagtataagtgaaactt |
52953194 |
T |
|
| Q |
303 |
gttctgagatgagagagaagtttttgtgtacttggtgaagttgttcggtttggttgttttttggagaagaagtgaaagcataaagagcaaaaagattggt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953193 |
gttctgagatgagagagaagtttttgtgtacttggtgaagttgttcggtttggttgttttttggagaagaagtgaaagcataaagagcaaaaagattggt |
52953094 |
T |
|
| Q |
403 |
tgtgataacggataagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaa |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953093 |
tgtgataacggataagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaa |
52952994 |
T |
|
| Q |
503 |
ccca-nnnnnnnncttatgagaaagagaagaagaagaacataaagatggagtttcaagtgacaaagatc |
570 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
52952993 |
cccatttttttttcttatgagaaagagaagaagaagaacataaa-attgagtttcaagtgacaaagatc |
52952926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 31904031 - 31904596
Alignment:
| Q |
1 |
caaaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaa |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||||||||| |
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| T |
31904031 |
caaaatcaatttctgagcataactccaatcatcttgacaatttccaaatactttgtaattcatatactgggacatcaaatcagaagatttctcacaagaa |
31904130 |
T |
|
| Q |
101 |
tgacccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgt |
200 |
Q |
| |
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| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
31904131 |
tagcccatagatgaaaccatctcagtcattccagttttggaatctttacccaaaggaagtttatgagggttaagaaaaagtttgagctcttttgcaatgt |
31904230 |
T |
|
| Q |
201 |
tgggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctgagtataagtgaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
31904231 |
tgggtcttgaaagatcaaaactttcatagccaagaagctgtttttctatctgggctagtttcttttgagactgatcaatttctctgagtataagtgaaac |
31904330 |
T |
|
| Q |
301 |
ttgttctgagatgagagagaagtttttgtgtacttggtgaagttgttcggtttggttgttttttggagaagaagtgaaagcataaagagcaaaaagattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904331 |
ttgttctgagatgagagagaagtttttgtgtacttgatgaagttgttcggtttggttgttttttggagaagaagtgaaagcataaagagcaaaaagattg |
31904430 |
T |
|
| Q |
401 |
gttgtgataacggataagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31904431 |
gttgtgataacggataagatcatgagaatgttaacaactgaagaacaaagtgttgagtttttgaatcttgctgttccatcaccaattttcaaagaaacag |
31904530 |
T |
|
| Q |
501 |
aacccannnnnnnncttatgagaaagagaagaagaagaacataaagatggagtttcaagtgacaaagatc |
570 |
Q |
| |
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|| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31904531 |
aa-cctttttttttcttatgag---gagaagaagaagaacataaagattgagtttcaagtgacaaagatc |
31904596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 416 - 570
Target Start/End: Complemental strand, 31673577 - 31673421
Alignment:
| Q |
416 |
aagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaaccca--nnnnnnn |
513 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31673577 |
aagatcatgagaatgttaacaactgaagaacaaagtgttgagtttttgaatcttgctgttccatcaccaattttcaaagaaacagaacccattttttttt |
31673478 |
T |
|
| Q |
514 |
ncttatgagaaagagaagaagaagaacataaagatggagtttcaagtgacaaagatc |
570 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
31673477 |
tcttatgaggaagagaagaagaagaacataaagattgagtttcaagtgacaaagatc |
31673421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 416 - 570
Target Start/End: Original strand, 31922097 - 31922253
Alignment:
| Q |
416 |
aagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaaccc--annnnnnn |
513 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31922097 |
aagatcatgagaatgttaacaactgaagaacagagtgttgagtttttgaatcttgctgttccatcaccaattttcaaagaaacagaaccctttttttttt |
31922196 |
T |
|
| Q |
514 |
ncttatgagaaagagaagaagaagaacataaagatggagtttcaagtgacaaagatc |
570 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31922197 |
tcttatgaggaagagaagaagaagaacataaagattgagtttcaagtgacaaagatc |
31922253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 43071164 - 43071122
Alignment:
| Q |
464 |
aatcttgctgttccatcaccaattttcaaagaaacagaaccca |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
43071164 |
aatcttgctgttccatcaccaattttcaaagaaactgaaccca |
43071122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 88 - 330
Target Start/End: Complemental strand, 7760285 - 7760043
Alignment:
| Q |
88 |
tttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagc |
187 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||| || ||||| | ||||| || || |||||||||| ||| | ||| |||| ||| ||| |
|
|
| T |
7760285 |
tttctcacaagaatgaccaactgatgacaccatttcagtgatcccagttcttgaatccttgcctaaaggaagttgatgtctttggaggaagattttcagc |
7760186 |
T |
|
| Q |
188 |
tcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctga |
287 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| || ||||||| |
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|
| T |
7760185 |
tcatttgcaatgttgggtcttgaaagatcaatgctttcataaccaagaagctgtttttccatctgggctagtttcttttgagacaaatctatctctctga |
7760086 |
T |
|
| Q |
288 |
gtataagtgaaacttgttctgagatgagagagaagtttttgtg |
330 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
7760085 |
gtatgagtgagacttgttctgagacaagagagatgtttttgtg |
7760043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 371 - 506
Target Start/End: Complemental strand, 7759987 - 7759852
Alignment:
| Q |
371 |
gaagtgaaagcataaagagcaaaaagattggttgtgataacggataagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttg |
470 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| || | || ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
7759987 |
gaagtgaaagcatagagagcaaagagattggttgtgatgacacagaaaatcatgagaatgttaacagctgaagaacaaagtgttgctcttttgaatcttg |
7759888 |
T |
|
| Q |
471 |
ctgttccatcaccaattttcaaagaaacagaaccca |
506 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
7759887 |
ctgttccatctccaattttcagtgaaactgaaccca |
7759852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 12052462 - 12052579
Alignment:
| Q |
6 |
tcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatgacc |
105 |
Q |
| |
|
||||||||| |||||| |||||||| ||||| ||||||| || |||||| | ||||| | |||||||| || || ||||||||||||| ||||||||| |
|
|
| T |
12052462 |
tcaatttctatgcaaatctccaatcgtcttggcaatttcgaattactttgaagttcatgtgttgagacaagaattcagaagatttctcactagaatgacc |
12052561 |
T |
|
| Q |
106 |
cacagatgaaaccatttc |
123 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
12052562 |
cacaaatgaaaccatttc |
12052579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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