View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_high_5 (Length: 499)
Name: NF17756_high_5
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_high_5 |
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| [»] scaffold0591 (3 HSPs) |
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Alignment Details
Target: scaffold0591 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 242 - 478
Target Start/End: Complemental strand, 7306 - 7063
Alignment:
| Q |
242 |
tttagccaaatatgttgttgataagcctgaccattttggattgagggttatcaattgactggcatattcttttatttcttttttgttgtataaatgattg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7306 |
tttagccaaatatgttgttgataagcctgaccattttggattgagggttatcaattgactggcatattcttttatttcttttttgttgtataaatgattg |
7207 |
T |
|
| Q |
342 |
gcttattctattgcatctaattcaggactttnnnnnnnnttcaacannnnnnngtttgaaaaagagcttgcttgttcttctaattatcca-------atg |
434 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7206 |
gcttattctattgcatctaattcagcacttttaaaaaaattcaacatttttttgtttgaaaaagagcttgcttgttcttctaattatccaatataccatg |
7107 |
T |
|
| Q |
435 |
aacaacaattcatattcatattcactcaccttcataagaatggc |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7106 |
aacaacaattcatattcatattcactcaccttcataagaatggc |
7063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 7573 - 7413
Alignment:
| Q |
12 |
tatactttcacccctacaaatttctttaaaaccacattcatatatggatttgtttatctagaccagatcctatgttgataggtaaatatagtaaacggtg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||| |
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| T |
7573 |
tatactttcacccctacaaatttctttaaaaccacattcatatatggatttgtttatctagaacagatcgtatgtggataggtaaatatagttaacggtg |
7474 |
T |
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| Q |
112 |
-nnnnnnncattcaatttgattgaatggggaagagaatgattcttaagaacgacagggttg |
171 |
Q |
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| T |
7473 |
tttcttcccattcaatttgattgaatggggaagagaatgattcttaagaacgacagggttg |
7413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 7391 - 7354
Alignment:
| Q |
193 |
tttagaaacactacaatctaacatttagccaaatatcc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7391 |
tttagaaacactacaatctaacatttagccaaatatcc |
7354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 317
Target Start/End: Original strand, 28646386 - 28646682
Alignment:
| Q |
25 |
ctacaaatttctttaaaaccacattcatatatggatttgtttatctagaccagatcctatgttgataggtaaatatagtaaacggtgnnnnnnncattca |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||| |||||| |
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| T |
28646386 |
ctacaaatttctttaaaaccacattcatatatggatttgtttatctagacaagatcatatgtggataggtaaatat-gtaaacggtatttttcccattca |
28646484 |
T |
|
| Q |
125 |
atttgattgaatggggaagagaatgattcttaagaacgacagggttgnnnnnnnnnnnnnnnnnnnnntttagaaacactacaatctaacatttagccaa |
224 |
Q |
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|||||||||||||| ||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28646485 |
atttgattgaatggagaagagagtggttctaaagaacgacagggttggaaaaagaaactctcaaaaaatttagaaacactacaatctaacatttagccaa |
28646584 |
T |
|
| Q |
225 |
atatccctnnnnnnnnnt-----ttagccaaatatgttgttgataagcctgaccattttggattgagggttatcaattgactggcatattcttttatt |
317 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
28646585 |
atatccctacaaaaaaataatatttagccaaatatgttgttgataagcctgaccattttggattgagggttatcaattggctgacatattcttttatt |
28646682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 317
Target Start/End: Original strand, 28650970 - 28651266
Alignment:
| Q |
25 |
ctacaaatttctttaaaaccacattcatatatggatttgtttatctagaccagatcctatgttgataggtaaatatagtaaacggtgnnnnnnncattca |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||| |||||| |
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| T |
28650970 |
ctacaaatttctttaaaaccacattcatatatggatttgtttatctagacaagatcatatgtggataggtaaatat-gtaaacggtatttttcccattca |
28651068 |
T |
|
| Q |
125 |
atttgattgaatggggaagagaatgattcttaagaacgacagggttgnnnnnnnnnnnnnnnnnnnnntttagaaacactacaatctaacatttagccaa |
224 |
Q |
| |
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|||||||||||||| ||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28651069 |
atttgattgaatggagaagagagtggttctaaagaacgacagggttggaaaaagaaactctcaaaaaatttagaaacactacaatctaacatttagccaa |
28651168 |
T |
|
| Q |
225 |
atatccctnnnnnnnnnt-----ttagccaaatatgttgttgataagcctgaccattttggattgagggttatcaattgactggcatattcttttatt |
317 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
28651169 |
atatccctacaaaaaaataatatttagccaaatatgttgttgataagcctgaccattttggattgagggttatcaattggctgacatattcttttatt |
28651266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 309 - 469
Target Start/End: Original strand, 28642493 - 28642660
Alignment:
| Q |
309 |
tcttttatttcttttttgttgtataaatgattggcttattctattgcatctaattcaggactttnnnnnnnnttcaacannnnnnngtttgaaaaagagc |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
28642493 |
tcttttatttcttttttgttgtataaatgattgactttttctattgcatctaattcaacacttttaaaaaaattcaacatttttttgtttgaaaaagagc |
28642592 |
T |
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| Q |
409 |
ttgcttgttcttctaattatcca-------atgaacaacaattcatattcatattcactcaccttcat |
469 |
Q |
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||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28642593 |
ttgtttgttctccttattatccaatataccatgaacaacaattcatattcatattcactcaccttcat |
28642660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 320 - 469
Target Start/End: Original strand, 28646869 - 28647025
Alignment:
| Q |
320 |
ttttttgttgtataaatgattggcttattctattgcatctaattcaggactttnnnnnnnnttcaacannnnnnngtttgaaaaagagcttgcttgttct |
419 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
28646869 |
ttttttgttgtataaatgattggctttttctattgcatctaattcaacacttttaaaaaatttcaacatttttttgtttgaaaaagagcttgtttgttct |
28646968 |
T |
|
| Q |
420 |
tctaattatcca-------atgaacaacaattcatattcatattcactcaccttcat |
469 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28646969 |
ccttattatccaatataccatgaacaacaattcatattcatattcactcaccttcat |
28647025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 320 - 469
Target Start/End: Original strand, 28651453 - 28651609
Alignment:
| Q |
320 |
ttttttgttgtataaatgattggcttattctattgcatctaattcaggactttnnnnnnnnttcaacannnnnnngtttgaaaaagagcttgcttgttct |
419 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
28651453 |
ttttttgttgtataaatgattggctttttctattgcatctaattcaacacttttaaaaaatttcaacatttttttgtttgaaaaagagcttgtttgttct |
28651552 |
T |
|
| Q |
420 |
tctaattatcca-------atgaacaacaattcatattcatattcactcaccttcat |
469 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28651553 |
ccttattatccaatataccatgaacaacaattcatattcatattcactcaccttcat |
28651609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 242 - 365
Target Start/End: Original strand, 28624782 - 28624902
Alignment:
| Q |
242 |
tttagccaaatatgttgttgataagcctgaccat-tttggattgagggttatcaattgactggcatattcttttatttcttttttgttgtataaatgatt |
340 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||| | |||| ||||||||||||| ||||| ||||||||||||| |
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| T |
28624782 |
tttagccaaatatgttgttgatatgcctgaccatatttggatggagggctatcaatgg--tggcttattcttttattttattttt--tgtataaatgatt |
28624877 |
T |
|
| Q |
341 |
ggcttattctattgcatctaattca |
365 |
Q |
| |
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||||||||| |||| |||||||||| |
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| T |
28624878 |
ggcttattcaattgtatctaattca |
28624902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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