View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17756_low_13 (Length: 275)
Name: NF17756_low_13
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_low_13 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 23)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 25569672 - 25569412
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25569672 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
25569573 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgtataagaggagttttaattcgttggaatgtattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25569572 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgtataagaggagttttaattcgttggaatgtattt |
25569473 |
T |
|
| Q |
201 |
ttaagtggttattcttttccttttgtaatgtttgtgtgggatgttttcaatatggtttttg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25569472 |
ttaagtggttattcttttccttttgtaatgtttgtgtgggatgttttcaatatggtttttg |
25569412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 25340765 - 25340505
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25340765 |
caaattgatgacatattgaattacatgtcatctatttttggtttagccctgaaatgttgagaagattcacctgaagcaagaattaatattgcagatgtta |
25340666 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgtataagaggagttttaattcgttggaatgtattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25340665 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgtataagaggagttttaattcgttggaatgtattt |
25340566 |
T |
|
| Q |
201 |
ttaagtggttattcttttccttttgtaatgtttgtgtgggatgttttcaatatggtttttg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25340565 |
ttaagtggttattcttttccttttgtaatgtttgtgtgggatgttttcaatatggtttttg |
25340505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 25452757 - 25452591
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25452757 |
caaattgatgacatattgacttacatgtcatctatttttggtttagccctgaattgttgtgaagattcacctgaagcaagaattaatattgcagatgtta |
25452658 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgt |
167 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25452657 |
ttgcgtcgctaatcaaaatcaagactttggttcttagcgcaagcagggtctagttagtttcatttgt |
25452591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 25475041 - 25474781
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||||||||||||| | |||||| ||||||| |||| |||||||||||||||| |||||||||| |
|
|
| T |
25475041 |
caaattgatgacatattgactaacataacatctatttttggtttagccctcagttgttgtgaagatttacctaaagcaagaattaatatggcagatgtta |
25474942 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgtataagaggagttttaattcgttggaatgtattt |
200 |
Q |
| |
|
|| |||| |||||||||||||||||||| ||||||| |||| |||||| |||||||||||||||||| || |||||||| | || ||||| |||| |
|
|
| T |
25474941 |
ttaagtcgctaatcaaaatcaagactttggttcttagagcaaacagggtatagttattttcatttgtacaattggagttttcgtgtgtaggaatccattt |
25474842 |
T |
|
| Q |
201 |
ttaagtggttattcttttccttttgtaatgtttgtgtgggatgttttcaatatggtttttg |
261 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25474841 |
ttaagtggttatctttttctttttgtaatgtttgtgtgggatgttttcaatatgctttttg |
25474781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 24875715 - 24875896
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||| |||| || | ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
24875715 |
caaattgatgatatatcgactcacatgtcatctatttttagtttagccctgagttgttgtgaagattcacctgaagcaagaatcaatacggcagatgtta |
24875814 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttatttt-catttgtataagaggagtttt |
181 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| |||||| ||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
24875815 |
ttgcgtcgctaatcaaaatcaaggctttggttcttggcgcaaacagggtctagttattttccttttgtataagtggagtttt |
24875896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 25646808 - 25646641
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
25646808 |
caaattgatgatatattgactcacatgtcatctatttttagtttagccctgaattgttgtgaagattcacctgaagcaagaatcaatatggcagatgtta |
25646709 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgta |
168 |
Q |
| |
|
||||| || ||| |||||||||||||||| || || |||||| || ||||||||||||||||||||| |
|
|
| T |
25646708 |
ttgcgacgctaaacaaaatcaagactttggttgttggcgcaaacacagtctagttattttcatttgta |
25646641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 24885574 - 24885733
Alignment:
| Q |
23 |
acatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgttattgcgtcgttaatcaaaatcaa |
122 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
24885574 |
acatgtcatctatttttagtttagccctgagttgttgtgaagattcacctgaagcaagaatcaatacggcagatgttattgcgtcgctaatcaaaatcaa |
24885673 |
T |
|
| Q |
123 |
gactttgattcttagcgcaagcagggtctagttatttt-catttgtataagaggagtttt |
181 |
Q |
| |
|
| ||||| ||||| |||||| ||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
24885674 |
ggctttggttcttggcgcaaacagggtctagttattttccttttgtataagtggagtttt |
24885733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 25714959 - 25714778
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||| |||| || | ||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25714959 |
caaattgatgatatatcgactcacatgtcatctatttttagtttagccctgagttgttgtgaaaattcacctgaagcaagaattaatatggcagatgtta |
25714860 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttatttt-catttgtataagaggagtttt |
181 |
Q |
| |
|
|||||||| |||| ||||| ||| ||||| ||||| |||||| ||||||||||||||||| | |||||| ||| |||||||| |
|
|
| T |
25714859 |
ttgcgtcgctaatgaaaataaaggctttggttcttggcgcaaacagggtctagttattttccttttgtacaagtggagtttt |
25714778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 29429298 - 29429048
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||||||||||| |||||||||||| ||| ||| ||| || ||||||||||||| | ||||||| |
|
|
| T |
29429298 |
caaattgatgacatattgacatacatgccttctatttttggtttagtcctgaattgttgtgaatgttcgcctaaaacaagaattaatatggtggatgtta |
29429199 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgtataagaggagttttaattcgttggaatgtattt |
200 |
Q |
| |
|
||| || | |||||||||||||||||||| ||||| |||| ||||| ||||||||||||| ||| ||| ||||||||| || || |||||||| | |
|
|
| T |
29429198 |
ttgggt-gctaatcaaaatcaagactttgtttcttgatgcaaatggggtccagttattttcattcgtacaagtagagttttaactctttagaatgtatgt |
29429100 |
T |
|
| Q |
201 |
ttaagtggttattcttttccttttgtaatgtttgtgtgggatgttttcaatat |
253 |
Q |
| |
|
||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29429099 |
ttaggtgtttatt-ttttccttttgtaatgtttgtatgggatgttttcaatat |
29429048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 24913366 - 24913527
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||| | ||||||| | ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
24913366 |
caaattgattatatattgactcacatgtcatctatttttagtttagccctgatttgttgtgaagattcacctgaagcaagaatcaatatggcagatgtta |
24913465 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttca |
162 |
Q |
| |
|
||||| || |||||||||||||||||||| || || |||||| || |||||||||||||| |
|
|
| T |
24913466 |
ttgcgacgctaatcaaaatcaagactttggttgttggcgcaaacacaatctagttattttca |
24913527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 25604402 - 25604236
Alignment:
| Q |
2 |
aaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgttat |
101 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
25604402 |
aaattgatgatatattgactcacatgtcatctatttttagtttagctctgagttgttgtgaagattcacctgaagcaagaatcaatatggcagaagttat |
25604303 |
T |
|
| Q |
102 |
tgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgta |
168 |
Q |
| |
|
||| || |||||||||||||||||||| || || |||||| | ||||||||||||||||||||| |
|
|
| T |
25604302 |
tgcttcactaatcaaaatcaagactttggttgttggcgcaaacgcagtctagttattttcatttgta |
25604236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 25489966 - 25489799
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||| | ||||||| | ||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
25489966 |
caaattgataatatattgactcacatgtcatctatttttagtttagccatgagttgttgtgaagattcacctgaagcaagaatcaatatggcagatgtta |
25489867 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgta |
168 |
Q |
| |
|
||||| | ||||||||||||||||||| || | |||||| || ||||||||||||||||||||| |
|
|
| T |
25489866 |
ttgcgacactaatcaaaatcaagactttagttgctggcgcaaacacagtctagttattttcatttgta |
25489799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 25695126 - 25694959
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||| | ||||||| | ||||||||||||||||| ||||||| || | |||||| || |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
25695126 |
caaattgataatatattgactcacatgtcatctatttttagtttagctctaagttgttgtgaggattcacctgaagcaagaatcaatatggcagatgtta |
25695027 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgta |
168 |
Q |
| |
|
||||| || ||||||||||||| |||||| || || |||||| || ||||||||||||||||||||| |
|
|
| T |
25695026 |
ttgcgacgctaatcaaaatcaacactttggttgttcgcgcaaacacagtctagttattttcatttgta |
25694959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 25385823 - 25385662
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||| | ||||||| | ||||||||||||||||| |||||||| ||| |||||| |||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
25385823 |
caaattgattatatattgactcacatgtcatctatttttagtttagccttgagttgttgtgaagattcacttgaagcaagaatcaatatggcagatgtta |
25385724 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttca |
162 |
Q |
| |
|
||||| || ||||||||||||| |||||| || || |||||| || ||||||||||||||| |
|
|
| T |
25385723 |
ttgcgacgctaatcaaaatcaacactttggttgttggcgcaaacacagtctagttattttca |
25385662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 25685411 - 25685255
Alignment:
| Q |
3 |
aattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgttatt |
102 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||| ||||||| |||||||||| ||||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
25685411 |
aattgatgatatattgactcacatgtcatctatttttagtttagcattgaattgttgtgaagaatcacctgatgcaagaatcaatatggcagatgttatt |
25685312 |
T |
|
| Q |
103 |
gcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattt |
159 |
Q |
| |
|
| |||| |||| ||||| ||| ||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
25685311 |
gtgtcgctaatgaaaataaaggctttggttcttggcgcaaacagggtctagttattt |
25685255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 22901435 - 22901598
Alignment:
| Q |
2 |
aaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgttat |
101 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||| |
|
|
| T |
22901435 |
aaattgatgacatattgagttgcatgtcatctatttttggtttagccctgaattgttgcaaagattcacctgaagaaagaattaatatggaagatgttat |
22901534 |
T |
|
| Q |
102 |
tgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcattt |
165 |
Q |
| |
|
| | ||||||||||||||||| || ||||| | || || |||||||||||||| |||| |
|
|
| T |
22901535 |
caagatgctaatcaaaatcaagactatggttcttgatgaaaacatggtctagttattttaattt |
22901598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 25322422 - 25322261
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||| ||| || | |||| |||||||||||| |||||||||||| |||||| |||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
25322422 |
caaattgatgatctatcgactcacatatcatctatttttagtttagccctgagttgttgtgaagattcacctaaagcaagaatcaatatggcagatgtta |
25322323 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttca |
162 |
Q |
| |
|
||||| || ||||||||||||| |||||| || || |||||| || ||||||||||||||| |
|
|
| T |
25322322 |
ttgcgacgctaatcaaaatcaacactttggttgttggcgcaaacacagtctagttattttca |
25322261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 25800052 - 25799885
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||| ||||||| | ||||||||| ||||||| ||||||| ||||||| || ||||| |||||||| || ||||| ||||| |||||||||| |
|
|
| T |
25800052 |
caaattgatgatatattgactcacatgtcatatatttttagtttagcattgaattgctgtgaagaatcacctgatgccagaatcaatatggcagatgtta |
25799953 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgta |
168 |
Q |
| |
|
||||| || |||||||||||||||||||| || || | |||| || |||||||||||||| |||||| |
|
|
| T |
25799952 |
ttgcgacgctaatcaaaatcaagactttggttgttggtgcaaacacagtctagttattttcgtttgta |
25799885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 23257698 - 23257574
Alignment:
| Q |
5 |
ttgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgttattgc |
104 |
Q |
| |
|
||||||| || |||| | ||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
23257698 |
ttgatgatattttgactcacatgtcatctatttttggtttagccctgcattgttgcgaatattcttctgaatcaagaattaatatgacagatgttattgc |
23257599 |
T |
|
| Q |
105 |
gtcgttaatcaaaatcaagactttg |
129 |
Q |
| |
|
||| | |||||||||||||||||| |
|
|
| T |
23257598 |
gtcactcatcaaaatcaagactttg |
23257574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 25694945 - 25694899
Alignment:
| Q |
215 |
ttttccttttgtaatgtttgtgtgggatgttttcaatatggtttttg |
261 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
25694945 |
ttttccttttgtaatgtttgtgtttgatgttttcaatattgtttttg |
25694899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 25799870 - 25799824
Alignment:
| Q |
215 |
ttttccttttgtaatgtttgtgtgggatgttttcaatatggtttttg |
261 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
25799870 |
ttttccttttgtaatgtttgtgtttgatgttttcaatattgtttttg |
25799824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 25604221 - 25604177
Alignment:
| Q |
215 |
ttttccttttgtaatgtttgtgtgggatgttttcaatatggtttt |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
25604221 |
ttttccttttgtaatgtttgtgtttgatgttttcaatattgtttt |
25604177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 25489783 - 25489737
Alignment:
| Q |
215 |
ttttccttttgtaatgtttgtgtgggatgttttcaatatggtttttg |
261 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
25489783 |
ttttccttttgtaaggtttgtgtttgatgttttcaatattgtttttg |
25489737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 17353 - 17520
Alignment:
| Q |
1 |
caaattgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgtta |
100 |
Q |
| |
|
||||||||||| |||| || | ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
17353 |
caaattgatgatatatcgactcacatgtcatctatttttagtttagccctgagttgttgtgaagattcacctgaagcaagaatcaatatggcagatgtta |
17452 |
T |
|
| Q |
101 |
ttgcgtcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgta |
168 |
Q |
| |
|
||||| || |||||||||||||||||||| || || |||||| || ||||||||||||||||||||| |
|
|
| T |
17453 |
ttgcgacgctaatcaaaatcaagactttggttgttggcgcaaacacagtctagttattttcatttgta |
17520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 4808 - 4970
Alignment:
| Q |
6 |
tgatgacatattgatttacatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgttattgcg |
105 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
4808 |
tgatgatatattgattcatatgtcatctatttttggtttagctttgaattgttgcgaatattcaccggaagcaagaattaatatgacagatgttattgcg |
4907 |
T |
|
| Q |
106 |
tcgttaatcaaaatcaagactttgattcttagcgcaagcagggtctagttattttcatttgta |
168 |
Q |
| |
|
||| |||| ||||||||||||| | |||| | || || ||| |||||||||||||||||| |
|
|
| T |
4908 |
tcgctaataaaaatcaagacttcagtgtttagggtaaacatggtgtagttattttcatttgta |
4970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 10323614 - 10323480
Alignment:
| Q |
23 |
acatgtcatctatttttggtttagccctgaattgttgcgaagattcacctgaagcaagaattaatattgcagatgttattgcgtcgttaatcaaaatcaa |
122 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||| || |
|
|
| T |
10323614 |
acatgtcatctatttttagtttatccctgaattgttgtgaagattcacctgaagcaagaatcaatatggaagatgttattgcgtctctaatcaaaataaa |
10323515 |
T |
|
| Q |
123 |
gactttgattcttagcgcaagcagggtctagttat |
157 |
Q |
| |
|
||||||| ||||| ||| || | ||||| |||||| |
|
|
| T |
10323514 |
gactttggttcttggcgaaaactgggtcaagttat |
10323480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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