View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17756_low_14 (Length: 275)

Name: NF17756_low_14
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17756_low_14
NF17756_low_14
[»] chr6 (32 HSPs)
chr6 (167-275)||(10154001-10154109)
chr6 (1-68)||(10154140-10154207)
chr6 (2-79)||(2514610-2514687)
chr6 (3-87)||(5328874-5328958)
chr6 (2-92)||(10452445-10452535)
chr6 (4-62)||(29274316-29274374)
chr6 (1-87)||(32386183-32386269)
chr6 (4-81)||(32386650-32386727)
chr6 (4-60)||(4248885-4248941)
chr6 (4-75)||(14492214-14492285)
chr6 (1-56)||(323742-323797)
chr6 (15-62)||(2727954-2728001)
chr6 (4-79)||(9732384-9732459)
chr6 (10-57)||(32917156-32917203)
chr6 (4-62)||(3217277-3217335)
chr6 (4-62)||(29269821-29269879)
chr6 (5-87)||(29940696-29940778)
chr6 (27-81)||(32578060-32578114)
chr6 (1-62)||(4247719-4247779)
chr6 (1-62)||(8420281-8420342)
chr6 (1-58)||(9027506-9027563)
chr6 (1-62)||(9833181-9833242)
chr6 (4-57)||(20671952-20672005)
chr6 (5-62)||(21959653-21959710)
chr6 (1-62)||(24774683-24774744)
chr6 (2-43)||(30784501-30784542)
chr6 (13-62)||(31668781-31668830)
chr6 (8-56)||(264302-264350)
chr6 (10-62)||(1810393-1810445)
chr6 (2-54)||(2034524-2034575)
chr6 (1-45)||(4420559-4420603)
chr6 (4-64)||(24836286-24836346)
[»] scaffold0590 (1 HSPs)
scaffold0590 (2-80)||(1159-1237)
[»] scaffold0275 (1 HSPs)
scaffold0275 (2-80)||(2738-2816)
[»] chr2 (34 HSPs)
chr2 (4-92)||(31461333-31461421)
chr2 (2-91)||(3102589-3102678)
chr2 (4-79)||(35459818-35459893)
chr2 (4-87)||(11393453-11393536)
chr2 (4-87)||(11410114-11410197)
chr2 (9-87)||(11393747-11393825)
chr2 (9-87)||(11410408-11410486)
chr2 (5-87)||(33197327-33197409)
chr2 (1-78)||(28803590-28803667)
chr2 (1-62)||(34339048-34339109)
chr2 (2-62)||(17952786-17952846)
chr2 (5-56)||(25609727-25609778)
chr2 (1-71)||(14209193-14209263)
chr2 (1-62)||(27288558-27288619)
chr2 (1-62)||(43530195-43530256)
chr2 (4-56)||(28677739-28677791)
chr2 (7-87)||(37845442-37845522)
chr2 (5-92)||(4550672-4550759)
chr2 (1-56)||(10143103-10143158)
chr2 (1-56)||(34054985-34055040)
chr2 (1-56)||(36852396-36852451)
chr2 (3-62)||(37033969-37034028)
chr2 (8-56)||(44600470-44600520)
chr2 (1-51)||(13866825-13866875)
chr2 (7-60)||(13864577-13864630)
chr2 (1-81)||(18884787-18884868)
chr2 (1-62)||(18962122-18962183)
chr2 (8-45)||(26143732-26143769)
chr2 (1-62)||(37053519-37053580)
chr2 (4-61)||(38239638-38239695)
chr2 (4-33)||(41851252-41851281)
chr2 (8-56)||(3611157-3611205)
chr2 (8-56)||(4026748-4026796)
chr2 (9-45)||(9395072-9395108)
[»] chr8 (35 HSPs)
chr8 (2-86)||(5071052-5071136)
chr8 (4-87)||(787193-787276)
chr8 (2-78)||(3645901-3645977)
chr8 (4-92)||(10727092-10727180)
chr8 (4-79)||(14482110-14482185)
chr8 (4-79)||(29699162-29699237)
chr8 (1-92)||(39392745-39392836)
chr8 (1-62)||(35534945-35535006)
chr8 (4-79)||(2364560-2364635)
chr8 (8-79)||(4558706-4558777)
chr8 (3-62)||(18356244-18356303)
chr8 (2-87)||(8799305-8799390)
chr8 (11-56)||(10114421-10114466)
chr8 (1-78)||(11119083-11119160)
chr8 (10-59)||(11188248-11188297)
chr8 (3-92)||(34563145-34563234)
chr8 (5-62)||(14247318-14247377)
chr8 (4-60)||(40356798-40356854)
chr8 (3-62)||(35298564-35298623)
chr8 (8-50)||(1929988-1930030)
chr8 (27-77)||(6918941-6918991)
chr8 (1-43)||(10218858-10218900)
chr8 (2-56)||(26215427-26215481)
chr8 (4-45)||(1470943-1470984)
chr8 (4-45)||(3537118-3537159)
chr8 (1-58)||(6918263-6918320)
chr8 (1-42)||(8066925-8066966)
chr8 (1-62)||(20672697-20672758)
chr8 (2-62)||(26717182-26717240)
chr8 (1-62)||(40728502-40728563)
chr8 (8-57)||(42597331-42597380)
chr8 (2-62)||(14949813-14949873)
chr8 (1-45)||(27465315-27465359)
chr8 (2-34)||(27728106-27728138)
chr8 (2-78)||(28769424-28769500)
[»] chr5 (33 HSPs)
chr5 (5-79)||(20982223-20982297)
chr5 (2-80)||(37063159-37063237)
chr5 (3-61)||(7096213-7096271)
chr5 (2-81)||(35135747-35135826)
chr5 (4-54)||(12595538-12595588)
chr5 (10-92)||(26516193-26516275)
chr5 (6-79)||(29115302-29115375)
chr5 (1-62)||(32059673-32059733)
chr5 (6-79)||(34690782-34690855)
chr5 (8-79)||(9202839-9202911)
chr5 (10-62)||(13224354-13224406)
chr5 (8-56)||(28776906-28776954)
chr5 (27-87)||(37611301-37611361)
chr5 (27-87)||(37788031-37788091)
chr5 (8-56)||(40048371-40048419)
chr5 (8-56)||(40590458-40590506)
chr5 (4-62)||(6738494-6738552)
chr5 (1-79)||(6739780-6739858)
chr5 (4-62)||(17756816-17756874)
chr5 (4-62)||(35095870-35095928)
chr5 (4-58)||(39128568-39128622)
chr5 (8-42)||(39594753-39594787)
chr5 (12-57)||(706393-706438)
chr5 (8-45)||(4014515-4014552)
chr5 (37-78)||(13264226-13264267)
chr5 (19-60)||(14716572-14716613)
chr5 (1-62)||(28586850-28586911)
chr5 (7-64)||(30217005-30217062)
chr5 (1-62)||(31694443-31694504)
chr5 (5-62)||(36539671-36539728)
chr5 (3-92)||(39257472-39257561)
chr5 (6-34)||(20922789-20922817)
chr5 (2-62)||(35960339-35960399)
[»] chr3 (28 HSPs)
chr3 (5-79)||(41028939-41029013)
chr3 (4-87)||(21862262-21862346)
chr3 (3-87)||(54775028-54775112)
chr3 (1-62)||(38462206-38462267)
chr3 (5-64)||(905058-905117)
chr3 (3-78)||(43116514-43116589)
chr3 (4-62)||(3182449-3182507)
chr3 (1-59)||(8007779-8007837)
chr3 (4-62)||(44374731-44374789)
chr3 (1-58)||(12923409-12923466)
chr3 (1-79)||(23785161-23785241)
chr3 (10-78)||(16790181-16790249)
chr3 (3-55)||(20192692-20192744)
chr3 (2-62)||(27792797-27792857)
chr3 (1-79)||(1816490-1816569)
chr3 (1-80)||(36101475-36101554)
chr3 (4-54)||(1395604-1395654)
chr3 (4-62)||(16790443-16790501)
chr3 (50-92)||(20874433-20874475)
chr3 (11-49)||(44061117-44061155)
chr3 (1-43)||(49587000-49587042)
chr3 (1-62)||(22232751-22232812)
chr3 (1-62)||(40122836-40122897)
chr3 (1-62)||(44284142-44284203)
chr3 (1-62)||(51278241-51278302)
chr3 (16-56)||(402640-402680)
chr3 (10-62)||(25964367-25964419)
chr3 (2-62)||(28779281-28779341)
[»] chr7 (26 HSPs)
chr7 (1-62)||(7244627-7244688)
chr7 (1-79)||(27481378-27481456)
chr7 (2-79)||(47003995-47004072)
chr7 (4-77)||(8445196-8445269)
chr7 (4-61)||(24973870-24973927)
chr7 (1-62)||(31341119-31341180)
chr7 (1-62)||(45593803-45593864)
chr7 (7-64)||(46213726-46213783)
chr7 (1-61)||(33894549-33894608)
chr7 (1-60)||(3610824-3610883)
chr7 (7-62)||(5373150-5373205)
chr7 (4-87)||(49060440-49060523)
chr7 (4-62)||(991995-992053)
chr7 (1-63)||(3241365-3241427)
chr7 (4-62)||(35536032-35536090)
chr7 (1-87)||(39505857-39505943)
chr7 (1-78)||(753288-753365)
chr7 (4-45)||(7453485-7453526)
chr7 (1-45)||(5006593-5006637)
chr7 (3-55)||(5276156-5276208)
chr7 (4-79)||(5620183-5620256)
chr7 (2-54)||(35808989-35809041)
chr7 (8-56)||(37832230-37832278)
chr7 (4-75)||(39908081-39908150)
chr7 (27-75)||(45078205-45078253)
chr7 (10-62)||(47006973-47007025)
[»] chr4 (28 HSPs)
chr4 (1-62)||(4191664-4191726)
chr4 (1-79)||(7342098-7342176)
chr4 (2-60)||(47970245-47970303)
chr4 (1-62)||(54325121-54325182)
chr4 (6-78)||(8422926-8422998)
chr4 (2-62)||(36734818-36734878)
chr4 (4-62)||(22684603-22684661)
chr4 (4-45)||(19040202-19040243)
chr4 (1-62)||(44319875-44319935)
chr4 (2-55)||(51044544-51044597)
chr4 (7-55)||(4798649-4798697)
chr4 (5-41)||(49940383-49940419)
chr4 (6-62)||(51555956-51556012)
chr4 (3-62)||(19422343-19422402)
chr4 (4-63)||(21193922-21193981)
chr4 (4-79)||(27671919-27671994)
chr4 (8-51)||(44138495-44138538)
chr4 (2-80)||(5219585-5219663)
chr4 (12-58)||(40709475-40709521)
chr4 (5-62)||(969433-969490)
chr4 (27-72)||(2980581-2980626)
chr4 (8-45)||(3155545-3155582)
chr4 (10-79)||(7749175-7749244)
chr4 (4-44)||(3175894-3175934)
chr4 (4-56)||(9680595-9680647)
chr4 (1-57)||(20907103-20907159)
chr4 (2-62)||(24160580-24160640)
chr4 (4-79)||(32920487-32920560)
[»] chr1 (23 HSPs)
chr1 (2-62)||(48282058-48282119)
chr1 (1-60)||(18434562-18434621)
chr1 (4-87)||(36602690-36602773)
chr1 (2-77)||(45107533-45107607)
chr1 (4-59)||(46499941-46499996)
chr1 (4-62)||(44032086-44032144)
chr1 (4-74)||(45234110-45234180)
chr1 (8-62)||(49557066-49557120)
chr1 (13-62)||(6659628-6659677)
chr1 (1-62)||(23895261-23895322)
chr1 (4-56)||(23544727-23544779)
chr1 (4-59)||(289168-289223)
chr1 (1-56)||(45999372-45999427)
chr1 (5-62)||(870970-871027)
chr1 (15-60)||(13037791-13037836)
chr1 (15-56)||(15942264-15942305)
chr1 (5-62)||(23373378-23373435)
chr1 (1-62)||(30259571-30259632)
chr1 (1-62)||(46980213-46980274)
chr1 (1-80)||(4338555-4338635)
chr1 (2-62)||(33339505-33339565)
chr1 (2-62)||(42550166-42550226)
chr1 (5-45)||(50319234-50319274)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-92)||(4867-4958)
[»] scaffold0060 (1 HSPs)
scaffold0060 (4-62)||(63372-63430)
[»] scaffold0024 (1 HSPs)
scaffold0024 (4-62)||(27501-27559)
[»] scaffold0110 (1 HSPs)
scaffold0110 (3-79)||(4309-4386)
[»] scaffold0100 (1 HSPs)
scaffold0100 (12-92)||(42512-42592)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 10154109 - 10154001
Alignment:
Q  167 ttcgaaagaaccaatcggataagcaacggtcaaaatagtttcttatttttgtgagtcggtaaacgcnnnnnnnnagttatcatgttatttgtatgaagcc 266  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  10154109 ttcgaaagaaccaatcggataagcatcggtcaaaatagtttcttatttttgtgagtcggtaaacgcttttttttagttatcatgttatttgtatgaagcc 10154010  T
Q  267 tttacctat 275  Q
    |||||||||    
T  10154009 tttacctat 10154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10154207 - 10154140
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatt 68  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10154207 cagtttgactttattttatctttttctatagaaacagcttgtacagaagcacttatatgatatacatt 10154140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 2514687 - 2514610
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||||||  |||||||| |||||||||| ||||||||| ||||||  |||||||||||||||    
T  2514687 agtttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgctataag 2514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 5328958 - 5328874
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||||||||||||||||||||  |||||||| | |||| ||  |||||||| |||||||  ||||||||||||| |||||||||    
T  5328958 gtttgactttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataatcatttatgctatatgtggttaat 5328874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 10452445 - 10452535
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    ||||||| |||||||||| ||||  |||||||| |||||||||| ||||||| ||||||||  || |||||||||||| | ||||| ||||    
T  10452445 agtttgattttattttatattttgttatagaaatagcttatacataagcactgatatgatagccacttatgctataagagcttaattaagt 10452535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 29274316 - 29274374
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||| ||||||||| |||||||||| ||||| || |||||||    
T  29274316 tttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgata 29274374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32386183 - 32386269
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    |||||| |||||||||||||||||   |  |||| |||||||||| |||||||||||||||| || ||||| ||||||||| |||||    
T  32386183 cagttttactttattttatcttttctaagtgaaatagcttatacataagcacttatatgataaacttttatactataagtgcttaat 32386269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 32386650 - 32386727
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtg 81  Q
    |||||| ||||||||||||||  ||  |||| ||  |||||| |||||||||||||||| |||||||| |||||||||    
T  32386650 tttgaccttattttatcttttcttagtgaaatagtctatacataagcacttatatgataaacatttatactataagtg 32386727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 4248941 - 4248885
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatga 60  Q
    |||||||||||||||||||||  ||| |||| |||||||| | ||||||||||||||    
T  4248941 tttgactttattttatcttttgttattgaaatagcttatatataagcacttatatga 4248885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 14492285 - 14492214
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttata-tgatatacatttatgcta 75  Q
    |||||||| ||||||||||||  |||| ||| || ||||||| ||||||||||| ||||||||||||||||||    
T  14492285 tttgacttcattttatcttttggtata-aaataggttatacaaaagcacttataatgatatacatttatgcta 14492214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 323797 - 323742
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||| |||||||||||||||  |||||||| |||||||||| || |||||||    
T  323797 cagtttgaatttattttatcttttaatatagaaatagcttatacaaaaccacttat 323742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 2727954 - 2728001
Alignment:
Q  15 tttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  2727954 tttatcttttgttatagaagcagcttatacataagcacttatatgata 2728001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 9732459 - 9732384
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||| |||||||| |||  |||||||| ||||||| || ||||||||||||| || |  |||||||||||||    
T  9732459 tttgacttaattttatcctttaatatagaaatagcttatgcataagcacttatatggtaaatgtttatgctataag 9732384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 32917203 - 32917156
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttata 57  Q
    ||||||||||||||| |||| |||| |||||||||| |||||||||||    
T  32917203 tttattttatcttttgctattgaaatagcttatacataagcacttata 32917156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 3217277 - 3217335
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| |  || | ||| |||||||||| ||||||||||||||||    
T  3217277 tttgactttattttatcttctcttacaaaaatagcttatacataagcacttatatgata 3217335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 29269879 - 29269821
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| |  |||||||| || ||||||| ||||| ||||||||||    
T  29269879 tttgactttattttatcttctgttatagaaatagtttatacacaagcatttatatgata 29269821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 29940778 - 29940696
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||||||||||||||||||  |||||||| |||||||||  |||||||| ||| | | |   |||||||| |||||||||||    
T  29940778 ttgactttattttatcttttgttatagaaaaagcttatacttaagcacttgtataaaaaaagcttatgctaaaagtggttaat 29940696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 32578060 - 32578114
Alignment:
Q  27 tatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtg 81  Q
    |||||||| |||||| ||| ||||||||||||||||  |||||||||||| ||||    
T  32578060 tatagaaatagcttacacataagcacttatatgataatcatttatgctatgagtg 32578114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4247719 - 4247779
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||| ||| |||||||||||  |||||||| |||||||||| ||||||||| ||||||    
T  4247719 cagtttgaattt-ttttatcttttgttatagaaatagcttatacataagcacttacatgata 4247779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8420281 - 8420342
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||| |||  || ||||| | ||| |||| ||||||||||||||||    
T  8420281 cagtttgactttattttatcatttattaaagaaataacttgtacataagcacttatatgata 8420342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9027563 - 9027506
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatat 58  Q
    |||||||||||||||||||||| |  | |||||| |||||||| | ||||||||||||    
T  9027563 cagtttgactttattttatcttctattgtagaaatagcttatagataagcacttatat 9027506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9833181 - 9833242
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| | ||   ||||||| | |||||| ||||||||||||||||||    
T  9833181 cagtttgactttattttatttattgtaatagaaatatcttatagagaagcacttatatgata 9833242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 20671952 - 20672005
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttata 57  Q
    |||||||||||||||||||||  | |||||| |||||||||| || ||||||||    
T  20671952 tttgactttattttatcttttgatctagaaatagcttatacataatcacttata 20672005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 21959710 - 21959653
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||  ||| |||| |||||||||  |||||||| |||||||    
T  21959710 ttgactttattttatcttttgttatggaaatagcttatacttaagcacttctatgata 21959653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24774744 - 24774683
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| ||||  |||||||| || ||||| | ||||||||| ||||||    
T  24774744 cagtttgactttattttatattttgttatagaaatagtttatatataagcacttacatgata 24774683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 30784542 - 30784501
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttata 43  Q
    |||||||||||||||||||||||  |||||||| ||||||||    
T  30784542 agtttgactttattttatcttttgttatagaaaaagcttata 30784501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 31668781 - 31668830
Alignment:
Q  13 attttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||| ||||  |||||||| |||||||||| ||||||||||||||||    
T  31668781 attttatgttttgttatagaaatagcttatacataagcacttatatgata 31668830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 264350 - 264302
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||||||||| || |||||| |||||||| | ||||||||||    
T  264350 actttattttatcttttgctttagaaatagcttatatataagcacttat 264302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 1810393 - 1810445
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||  |||||||| ||||| | || ||||||||||||||||    
T  1810393 tttattttatcttttgttatagaaatagcttttgcataagcacttatatgata 1810445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 2034524 - 2034575
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcactt 54  Q
    |||||||||||||||||||||| | | || |||||||||||||| ||||||||    
T  2034524 agtttgactttattttatctttgt-tgtaaaaacagcttatacataagcactt 2034575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4420603 - 4420559
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||    
T  4420603 cagtttgactttattttatcttttgttatagaagtagcttataca 4420559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 24836286 - 24836346
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatata 64  Q
    |||||||||||||||||||||  |||||||| | |||||||| ||  |||||||| |||||    
T  24836286 tttgactttattttatcttttgttatagaaataacttatacataaatacttatataatata 24836346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 1159 - 1237
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagt 80  Q
    |||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||||| || ||||||||||||||    
T  1159 agtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagt 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 2816 - 2738
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagt 80  Q
    |||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||||| || ||||||||||||||    
T  2816 agtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagt 2738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 31461421 - 31461333
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    |||||||||||||||||||||  |||||||| |||||||| | || |||||||||||||||| ||||||||| ||||| ||||| ||||    
T  31461421 tttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgctagaagtgcttaattaagt 31461333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 3102678 - 3102589
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaag 91  Q
    |||||||||||||||||| |||| ||||| ||| |||||||||| ||||| |||||||||| ||||||||| | |||| | |||||||||    
T  3102678 agtttgactttattttatattttgctataaaaatagcttatacataagcagttatatgataaacatttatgttttaagcgcttaataaag 3102589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 35459893 - 35459818
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||||  |||| ||| |||||||||| || ||||||||||||| ||| ||||||||||||    
T  35459893 tttgactttattttatcttttggtatacaaatagcttatacaaaatcacttatatgataaacacttatgctataag 35459818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 11393453 - 11393536
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||| |||||| ||||||||  |||||||| |||||||| | |||||||||||||||| ||| || ||||||||||| |||||    
T  11393453 tttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaat 11393536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 11410114 - 11410197
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||| |||||| ||||||||  |||||||| |||||||| | |||||||||||||||| ||| || ||||||||||| |||||    
T  11410114 tttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaat 11410197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 11393747 - 11393825
Alignment:
Q  9 ctttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||||| ||||||||  |||||||| |||||||||| ||||||||| |||||| |  ||||||||||||||| |||||    
T  11393747 ctttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataagtgcttaat 11393825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 11410408 - 11410486
Alignment:
Q  9 ctttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||||| ||||||||  |||||||| |||||||||| ||||||||| |||||| |  ||||||||||||||| |||||    
T  11410408 ctttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataagtgcttaat 11410486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 33197327 - 33197409
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||||||||| ||||||||  |||||||| |||||||| | ||||||||||||||||  | |||||| |||||||| |||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataagtgtttaat 33197409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 28803590 - 28803667
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    ||||||||||||||||||||||||  ||| |||| | |||||| | ||||||||||||||||  ||||||||| ||||    
T  28803590 cagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagcatttatgccataa 28803667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34339109 - 34339048
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||| ||||||||||||||||||  ||||||||| || ||||||| ||||||||||||||||    
T  34339109 cagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgata 34339048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 17952786 - 17952846
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||||||  |||||||| |||||||| | |||| |||||||||||    
T  17952786 agtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgata 17952846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 25609778 - 25609727
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||||||||||||  |||||||| |||||||||| ||||||||||    
T  25609778 ttgactttattttatcttttcttatagaaatagcttatacataagcacttat 25609727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14209263 - 14209193
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttat 71  Q
    |||||||| |||||||||||||||  ||| |||| |||||| |||||| ||||||||||||| || |||||    
T  14209263 cagtttgaatttattttatcttttgttattgaaatagcttagacagaaacacttatatgataaacgtttat 14209193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27288619 - 27288558
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||| |||||||||||||||  |||||||||| ||| |||| ||||||||||| ||||    
T  27288619 cagtttgattttattttatcttttattatagaaacaacttttacataagcacttataggata 27288558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43530195 - 43530256
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||||| | ||||||||| ||||||| || |||  |||||||||||    
T  43530195 cagtttgactttattttatcttgtcctatagaaatagcttattcataagtgcttatatgata 43530256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 28677739 - 28677791
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||    
T  28677739 tttgactttattttatcttttacaataaaaatagcttatacacaagcacttat 28677791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 37845442 - 37845522
Alignment:
Q  7 gactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||||||||||| ||||  |||| ||| ||| |||| | ||| |||||||||||| ||||||| |||||||||| |||||    
T  37845442 gactttattttatattttattataaaaatagcatataaataagaacttatatgataaacatttacgctataagtgtttaat 37845522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 4550759 - 4550672
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    ||||| ||||||||||||||  ||| |||||| |||||||| |||||||||| |||||     ||||||||||||| |||||| ||||    
T  4550759 ttgacgttattttatcttttattatggaaacaacttatacataagcacttatgtgataagagattatgctataagttgttaattaagt 4550672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10143158 - 10143103
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||| ||||||||||||  |||||||| | |||||||| ||||||||||    
T  10143158 cagtttgacttaattttatcttttgttatagaaataacttatacataagcacttat 10143103  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34054985 - 34055040
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||| ||||||||||||||||  |||||||| ||| |||||| ||||||||||    
T  34054985 cagtttgcctttattttatcttttgttatagaaatagcctatacataagcacttat 34055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36852451 - 36852396
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||||||||||||||||| |  || ||||| |||||||||| ||||||||||    
T  36852451 cagtttgactttattttatcttctaatagagaaatagcttatacataagcacttat 36852396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 37034028 - 37033969
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||| |||||||| || ||||||| ||| | | ||||||||    
T  37034028 gtttgactttattttatctttttttatagaaatagtttatacataagtattcatatgata 37033969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 44600520 - 44600470
Alignment:
Q  8 actttattttatcttttt--ctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||||||||||  ||||||||| |||||||||| ||||||||||    
T  44600520 actttattttatctttttggctatagaaatagcttatacataagcacttat 44600470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13866875 - 13866825
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagca 51  Q
    ||||||||||| |||||||||||| ||||||||| || ||||||| |||||    
T  13866875 cagtttgacttaattttatcttttgctatagaaatagtttatacataagca 13866825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 13864630 - 13864577
Alignment:
Q  7 gactttattttatctttttctatagaaacagcttatacagaagcacttatatga 60  Q
    |||||||||||| |||||  |||||||| |||||||||| || |||||||||||    
T  13864630 gactttattttaccttttgttatagaaatagcttatacataaacacttatatga 13864577  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18884868 - 18884787
Alignment:
Q  1 cagtttgactttattttatctttttct-atagaaacagcttatacagaagcacttatatgatatacatttatgctataagtg 81  Q
    |||||||| |||||||||| ||||| | ||||||| | ||||||||  ||||||||||||||| | | | ||||||||||||    
T  18884868 cagtttgattttattttatattttttttatagaaataacttatacatgagcacttatatgataaaaactaatgctataagtg 18884787  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18962122 - 18962183
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||| |||||||||||||||||  |||| ||| |||| ||||| ||||||||| ||||||    
T  18962122 cagtttaactttattttatcttttgttataaaaatagctaatacataagcacttacatgata 18962183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 26143732 - 26143769
Alignment:
Q  8 actttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  26143732 actttattttatcttttgctatagaaatagcttataca 26143769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37053580 - 37053519
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| || |  |||||||| ||  |||||| ||||||||||||||||    
T  37053580 cagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgata 37053519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 38239638 - 38239695
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgat 61  Q
    |||||||| ||||||||||||  |||||||| |||||||||| || |||||| |||||    
T  38239638 tttgacttgattttatcttttgttatagaaatagcttatacataaacacttacatgat 38239695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 41851252 - 41851281
Alignment:
Q  4 tttgactttattttatctttttctatagaa 33  Q
    ||||||||||||||||||||||||||||||    
T  41851252 tttgactttattttatctttttctatagaa 41851281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 3611205 - 3611157
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||| ||||| ||||||||| | |||||||| ||||||||||    
T  3611205 actttattttaccttttgctatagaaataacttatacataagcacttat 3611157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 4026796 - 4026748
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||||||||| ||||| ||| |||||||| | ||||||||||    
T  4026796 actttattttatcttttgctataaaaatagcttatagataagcacttat 4026748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 9395108 - 9395072
Alignment:
Q  9 ctttattttatctttttctatagaaacagcttataca 45  Q
    |||||||||||||||||||||||||| | ||||||||    
T  9395108 ctttattttatctttttctatagaaaaatcttataca 9395072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 5071052 - 5071136
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaa 86  Q
    |||||||||||||||||| |||| ||||||||||| |||||||| ||| |  ||||||||| || ||||||||||||||| ||||    
T  5071052 agtttgactttattttatattttactatagaaacaacttatacataagaatgtatatgatacacgtttatgctataagtgattaa 5071136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 787193 - 787276
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||||||||||||||||| |  ||  ||||||||||| ||| ||||||||| |||||| |||||||||||||||||| |||||    
T  787193 tttgactttattttatcttatgttacggaaacagcttaaacataagcacttagatgataaacatttatgctataagtgcttaat 787276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 3645901 - 3645977
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    ||||||| ||| |||||| ||||  |||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  3645901 agtttgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgataaacacttatgctataa 3645977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 10727180 - 10727092
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    ||||| ||||||| ||||||| ||||||||| ||||||| || |||||||||||||||  ||| ||||||||||| || ||||| ||||    
T  10727180 tttgaatttatttcatcttttgctatagaaatagcttatgcataagcacttatatgatgaacacttatgctataaatgcttaattaagt 10727092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 14482185 - 14482110
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||||  |||||||| || ||||||| ||||||||||||||||  || | ||||||||||    
T  14482185 tttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcactaatgctataag 14482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 29699237 - 29699162
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||||  |||||||| | ||| |||| ||||| |||||||||| | ||||||||||||||    
T  29699237 tttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataag 29699162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 39392745 - 39392836
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    ||||||||||||||||||||||||  |||||||| || ||||||| |  |||||||||||||  || ||||||||||| || ||||| ||||    
T  39392745 cagtttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcacttatgctataaatgcttaattaagt 39392836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35534945 - 35535006
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||| |||||  |||||||| |||||||| | ||||||||||||||||    
T  35534945 cagtttgactttattttaacttttattatagaaatagcttatatataagcacttatatgata 35535006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 2364560 - 2364635
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    ||||||||||||||||||||| ||||| ||| ||| |||||| ||  | |||||||||| ||| ||||||||||||    
T  2364560 tttgactttattttatcttttgctataaaaatagcgtatacataaatagttatatgataaacacttatgctataag 2364635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 4558777 - 4558706
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||  |||||||| |||||||||| || |||||| || ||| || |||||||||||||    
T  4558777 actttattttatcttttattatagaaatagcttatacataaacacttacataataaacgtttatgctataag 4558706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 18356303 - 18356244
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||| ||||||||||||||||| ||||||||||| |||| ||| ||||| ||||||||||    
T  18356303 gtttaactttattttatcttttgctatagaaacaacttacacataagcaattatatgata 18356244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 8799390 - 8799305
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    |||||||||||||||||||||||  |||||||| | | || | | |||||| |||||||||  ||||| ||||||||||| |||||    
T  8799390 agtttgactttattttatcttttgttatagaaataacatacatacaagcacatatatgataagcatttgtgctataagtgcttaat 8799305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 10114466 - 10114421
Alignment:
Q  11 ttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||||    
T  10114466 ttattttatcttttgctatagaaatagcttatacataagcacttat 10114421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11119083 - 11119160
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    ||||||||||||||||||||||||  |||||||| | | |||||| ||||  |||||||||||  | |||||||||||    
T  11119083 cagtttgactttattttatcttttgttatagaaatatcgtatacataagcgattatatgatatgtagttatgctataa 11119160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 11188248 - 11188297
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttatatg 59  Q
    |||||||||||||||  |||||||||| |||||||| |||||||||||||    
T  11188248 tttattttatcttttgttatagaaacaacttatacataagcacttatatg 11188297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 34563234 - 34563145
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    |||||||||||||||||| |||   ||||||| | |||||| | |||||||||||||||| |  ||||||||||||| | ||||| ||||    
T  34563234 gtttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaagt 34563145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 14247318 - 14247377
Alignment:
Q  5 ttgactttattttatctttttct--atagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||| |  ||| |||||| ||||||| ||||||||||||||||    
T  14247318 ttgactttattttatctttttttttataaaaacagtttatacataagcacttatatgata 14247377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 40356854 - 40356798
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatga 60  Q
    |||||||||||||||||||||  |||| ||| |||||||| | ||||||||||||||    
T  40356854 tttgactttattttatcttttattatataaatagcttatagataagcacttatatga 40356798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 35298564 - 35298623
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||| ||||||||||||||||  ||  |||| |||||||||| ||||||||||||||||    
T  35298564 gtttggctttattttatcttttgttactgaaatagcttatacataagcacttatatgata 35298623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 1930030 - 1929988
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagc 50  Q
    ||||||||||||||||||||||||||| | |||||||| ||||    
T  1930030 actttattttatctttttctatagaaataacttatacataagc 1929988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 6918991 - 6918941
Alignment:
Q  27 tatagaaacagcttatacagaagcacttatatgatatacatttatgctata 77  Q
    |||| ||| |||||||||| |||||||||||||||| ||| ||||||||||    
T  6918991 tataaaaatagcttatacataagcacttatatgataaacacttatgctata 6918941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10218900 - 10218858
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttata 43  Q
    ||||||||||||||||||||||||  ||| |||||||||||||    
T  10218900 cagtttgactttattttatcttttgttatggaaacagcttata 10218858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 26215481 - 26215427
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||| |||||||||||||||||  |||||||| |||||||||| |||| |||||    
T  26215481 agtttaactttattttatcttttgttatagaaatagcttatacataagcgcttat 26215427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 1470943 - 1470984
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttataca 45  Q
    |||||||||||||||||||||  |||||||| ||||||||||    
T  1470943 tttgactttattttatcttttattatagaaatagcttataca 1470984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 3537118 - 3537159
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||||||| |||||||||  |||||||||    
T  3537118 tttgactttattttatcttttgctatagaaattgcttataca 3537159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6918263 - 6918320
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatat 58  Q
    ||||||||||||||||||||||||  |||| ||| |||||||| | || |||||||||    
T  6918263 cagtttgactttattttatcttttattatataaatagcttatatacaaacacttatat 6918320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8066925 - 8066966
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttat 42  Q
    ||||||||||||||||||||||||  |||| |||||||||||    
T  8066925 cagtttgactttattttatcttttgttatataaacagcttat 8066966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 20672758 - 20672697
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||||  |||| |||  || || ||| ||||||||||||||||    
T  20672758 cagtttgactttattttatcttttgttatataaagggcatacacataagcacttatatgata 20672697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 26717240 - 26717182
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||| ||  ||| ||  ||||||| |||||||||||||||||||    
T  26717240 agtttgactttattttatcttgtt--ataaaattagcttattcagaagcacttatatgata 26717182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40728502 - 40728563
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||||  |||||||| | ||||| ||  | |||||||||||||    
T  40728502 cagtttgactttattttatcttttgttatagaaataacttatgcatgaacacttatatgata 40728563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 42597380 - 42597331
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttata 57  Q
    |||||||||||||||||  |||||||| |||||||||| ||| |||||||    
T  42597380 actttattttatcttttgttatagaaatagcttatacataagtacttata 42597331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 14949873 - 14949813
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||| |||||||||||||  |||||||  |||||||||| ||| |||| |||||||    
T  14949873 agtttgactctattttatcttttgttatagaagtagcttatacataagaacttgtatgata 14949813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27465359 - 27465315
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttataca 45  Q
    |||||||| || |||||||||||| ||||||||| ||||||||||    
T  27465359 cagtttgatttgattttatcttttgctatagaaatagcttataca 27465315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 27728106 - 27728138
Alignment:
Q  2 agtttgactttattttatctttttctatagaaa 34  Q
    |||||||||||||||||||||||| ||||||||    
T  27728106 agtttgactttattttatctttttttatagaaa 27728138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 28769424 - 28769500
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    |||||||||| |||||||  |||  ||||| || |||||||||| ||||| ||||||||||  || |||||||||||    
T  28769424 agtttgacttaattttatagtttgttataggaatagcttatacataagcatttatatgataagcacttatgctataa 28769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 20982223 - 20982297
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||| |||  |||||||| |||||||||| ||||||||||||||||  || ||||||||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataag 20982297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 37063159 - 37063237
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagt 80  Q
    |||||||||||||||||||||||  |||||||| || ||||||| ||||| |||||||| |  ||||||||||||||||    
T  37063159 agtttgactttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttatgctataagt 37063237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 7096213 - 7096271
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgat 61  Q
    ||||||||||||||||||||||  |||||||| |||||||||| |||||||| ||||||    
T  7096213 gtttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 35135747 - 35135826
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtg 81  Q
    |||||||||||||||||||||||  |||||||| | |||||||| || |||||||||| ||  || ||||||||| ||||    
T  35135747 agtttgactttattttatcttttgttatagaaatatcttatacataaacacttatatgttaagcacttatgctatgagtg 35135826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 12595538 - 12595588
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcactt 54  Q
    ||||| ||||||||||||||| ||||||||| |||||||||| ||||||||    
T  12595538 tttgaatttattttatcttttgctatagaaatagcttatacacaagcactt 12595588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 26516275 - 26516193
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    |||||||||||||||  | |||||| |||||||||| ||||||||||||||||  |  |||||||||||| | ||||| ||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagt 26516193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 29115302 - 29115375
Alignment:
Q  6 tgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    ||||||||||||| |||||  | |||||| |||||||||| |||||||| ||||||| |  |||||||||||||    
T  29115302 tgactttattttaccttttgttgtagaaatagcttatacataagcacttttatgataaatgtttatgctataag 29115375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32059673 - 32059733
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||  | || | |||||||||||||| ||||||||||||||||    
T  32059673 cagtttgactttattttatcttagt-tacaaaaacagcttatacataagcacttatatgata 32059733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 34690855 - 34690782
Alignment:
Q  6 tgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||  |||||||| ||| |||||| ||| ||||| |||||  ||||||||| ||||||    
T  34690855 tgactttattttatcttttgttatagaaatagcgtatacataaggacttaaatgattaacatttatggtataag 34690782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 9202839 - 9202911
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttat-atgatatacatttatgctataag 79  Q
    ||||||||||||||||| ||| ||||| |||||||| | |||||||||| |||||| ||| || |||||||||    
T  9202839 actttattttatcttttgctacagaaatagcttatatataagcacttatcatgataaacacttgtgctataag 9202911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 13224406 - 13224354
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||  |||||||| |||||||||| |||||||| |||||||    
T  13224406 tttattttatcttttgttatagaaatagcttatacataagcacttctatgata 13224354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 28776954 - 28776906
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||||||||||| ||| ||| |||||||||| ||||||||||    
T  28776954 actttattttatctttttcaataaaaatagcttatacataagcacttat 28776906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 37611301 - 37611361
Alignment:
Q  27 tatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    |||||||| ||||| |||| |||||||||||||| |  ||||||||||||||||| |||||    
T  37611301 tatagaaatagcttttacataagcacttatatgacaaccatttatgctataagtgcttaat 37611361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 37788031 - 37788091
Alignment:
Q  27 tatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    |||||||| ||||| |||| |||||||||||||| |  ||||||||||||||||| |||||    
T  37788031 tatagaaatagcttttacataagcacttatatgacaaccatttatgctataagtgcttaat 37788091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 40048371 - 40048419
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||||||||||||  |||||||||| |||||||| ||||||||||    
T  40048371 actttattttatcttttgttatagaaacaacttatacataagcacttat 40048419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 40590506 - 40590458
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||||||||||||||||||  |||||||||| |||| |||||    
T  40590506 actttattttatctttttctatagaagtagcttatacataagcgcttat 40590458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 6738494 - 6738552
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||| ||||||  ||| |||| |||||||||| ||| ||||||||||||    
T  6738494 tttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgata 6738552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6739858 - 6739780
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    ||||||||||||||||||||||| | ||||||||   |||||||| || | ||||||||||| ||  ||||| ||||||    
T  6739858 cagtttgactttattttatctttatttatagaaatgacttatacataaacgcttatatgataaacgcttatgatataag 6739780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 17756816 - 17756874
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| |  || ||||||| || ||||| ||||||||||||||||    
T  17756816 tttgactttattttatcttctgttaaagaaacaactcatacataagcacttatatgata 17756874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 35095870 - 35095928
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||||  |||||||| || ||| | | ||||||||||||||||    
T  35095870 tttgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgata 35095928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 39128622 - 39128568
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatat 58  Q
    |||||||||||||||||||||  |||||||  |||||||||| |||||| |||||    
T  39128622 tttgactttattttatcttttgttatagaattagcttatacataagcacatatat 39128568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 39594787 - 39594753
Alignment:
Q  8 actttattttatctttttctatagaaacagcttat 42  Q
    ||||||||||||||||||||||||||| |||||||    
T  39594787 actttattttatctttttctatagaaatagcttat 39594753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 706438 - 706393
Alignment:
Q  12 tattttatctttttctatagaaacagcttatacagaagcacttata 57  Q
    ||||||||||||| ||||||||| |||||||||| |||| ||||||    
T  706438 tattttatcttttactatagaaatagcttatacataagcgcttata 706393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 4014515 - 4014552
Alignment:
Q  8 actttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  4014515 actttattttatcttttgctatagaaatagcttataca 4014552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 13264226 - 13264267
Alignment:
Q  37 gcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  13264226 gcttatacacaagcacttatatgataatcatttatgctataa 13264267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 14716572 - 14716613
Alignment:
Q  19 tctttttctatagaaacagcttatacagaagcacttatatga 60  Q
    |||||| ||||||||||| |||||||| ||||||||||||||    
T  14716572 tcttttactatagaaacaacttatacataagcacttatatga 14716613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28586850 - 28586911
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||||  |||||||| ||  |||||| || ||| |||||||||    
T  28586850 cagtttgactttattttatcttttgttatagaaatagtgtatacataaccacatatatgata 28586911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 30217062 - 30217005
Alignment:
Q  7 gactttattttatctttttctatagaaacagcttatacagaagcacttatatgatata 64  Q
    ||||||||||||||| || | |||||||  ||||||||| | ||||||||||||||||    
T  30217062 gactttattttatctcttgcgatagaaatggcttatacatacgcacttatatgatata 30217005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31694504 - 31694443
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||| ||||| ||||  |||||| | ||||||| || ||||||||||||||||    
T  31694504 cagtttgactttagtttatgttttgttatagacatagcttattcataagcacttatatgata 31694443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 36539728 - 36539671
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||  || | ||| |||||| ||| ||||||||||||||||    
T  36539728 ttgactttattttatcttttgataaacaaatagcttacacataagcacttatatgata 36539671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 39257472 - 39257561
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    |||||||||||||||| |||||  |||||| | ||| |||||| ||||||||| ||||||    ||||||||||||| | ||||| ||||    
T  39257472 gtttgactttattttaccttttgttatagagatagcatatacataagcacttacatgataatagtttatgctataagcgcttaattaagt 39257561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 20922817 - 20922789
Alignment:
Q  6 tgactttattttatctttttctatagaaa 34  Q
    |||||||||||||||||||||||||||||    
T  20922817 tgactttattttatctttttctatagaaa 20922789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 35960399 - 35960339
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||||||  |||||||| || |||| || ||  ||||||||||||    
T  35960399 agtttgactttattttatcttttattatagaaatagtttatgcataaatacttatatgata 35960339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 41028939 - 41029013
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    ||||||||||||| ||||||  |||||||| |||||||||| ||||||||||||||||  |||||| ||||||||    
T  41028939 ttgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataagcatttaagctataag 41029013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 21862262 - 21862346
Alignment:
Q  4 tttgactt-tattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    |||||||| |||||||||||||   |||||||||||||||||  ||||||||||| |||| || ||||||||||||||| |||||    
T  21862262 tttgacttgtattttatcttttgtaatagaaacagcttatacgcaagcacttataagataaacgtttatgctataagtgcttaat 21862346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 54775112 - 54775028
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    ||||||||||||||||||||||  |||||||| | |||| ||  |||||||| |||||||  ||||||||||||| |||||||||    
T  54775112 gtttgactttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataatcatttatgctatatgtggttaat 54775028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38462267 - 38462206
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||||  |||||||| |||||||| | || |||||||||||||    
T  38462267 cagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgata 38462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 905058 - 905117
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatata 64  Q
    ||||||||||||||||||||  |||||||| |||||||||  |||| |||||||||||||    
T  905058 ttgactttattttatcttttgttatagaaatagcttatacttaagcgcttatatgatata 905117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 43116514 - 43116589
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    |||||| || ||||||||||||  |||||||| |||||| ||| || ||||| ||||||| |||||||||||||||    
T  43116514 gtttgatttgattttatcttttgttatagaaatagcttacacataaacacttgtatgataaacatttatgctataa 43116589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 3182449 - 3182507
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||||||||||  | |||||||| || |||||| ||||||    
T  3182449 tttgactttattttatctttttctatagaagtaacttatacataaacacttaaatgata 3182507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8007779 - 8007837
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatg 59  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||| |||| ||| ||||    
T  8007779 cagtttgactttactttatcttttgttatagaaacagcttatacataagcccttgtatg 8007837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 44374731 - 44374789
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||||  || ||| | |||||||||| ||||||||||||||||    
T  44374731 tttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgata 44374789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12923409 - 12923466
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatat 58  Q
    ||||||||||||||||||||||||  || || || |||||||||| ||||||||||||    
T  12923409 cagtttgactttattttatcttttattacagcaatagcttatacacaagcacttatat 12923466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 23785241 - 23785161
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcac--ttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||||| | || |||||| | ||||| || |||||   |||||||||| ||||||||||||||||    
T  23785241 cagtttgactttattttatcttctgctgtagaaataacttatgcataagcatatttatatgataaacatttatgctataag 23785161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 16790181 - 16790249
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    |||||||||||||||  |||||||| | |||||| | |||||||||||||||| ||  |||||||||||    
T  16790181 tttattttatcttttgttatagaaataacttatatataagcacttatatgataaacgcttatgctataa 16790249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 20192692 - 20192744
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcactta 55  Q
    ||||||||||||||||||||||  |||| ||| |||||||||| |||||||||    
T  20192692 gtttgactttattttatcttttgttatataaatagcttatacataagcactta 20192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 27792857 - 27792797
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||| ||||||||||||||  | | |||| |||||||||| ||||||||||||||||    
T  27792857 agtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgata 27792797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 1816569 - 1816490
Alignment:
Q  1 cagtttgactttattttatctttttctat-agaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    ||||||||||||||||||||||||  ||| | ||| || |||||||  ||| ||||||||||| ||| ||||||||||||    
T  1816569 cagtttgactttattttatcttttattataaaaaatagtttatacattagctcttatatgataaacaattatgctataag 1816490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 36101554 - 36101475
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagt 80  Q
    |||||||||||||||||||||| |  || ||||| ||||||| || || ||||||| |||||  ||| ||||||||||||    
T  36101554 cagtttgactttattttatcttatattacagaaatagcttattcataaccacttatttgataagcatgtatgctataagt 36101475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 1395654 - 1395604
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcactt 54  Q
    |||||||||||||||||||||  |||||||| |||||||||| | ||||||    
T  1395654 tttgactttattttatcttttgttatagaaatagcttatacatatgcactt 1395604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 16790443 - 16790501
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||| |||||||||||| ||  |||| ||| |||||||||| ||||||||||||||||    
T  16790443 tttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgata 16790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 20874433 - 20874475
Alignment:
Q  50 cacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||    
T  20874433 cacttatatgatatgcatttatgctataagtgcttaattaagt 20874475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 44061117 - 44061155
Alignment:
Q  11 ttattttatctttttctatagaaacagcttatacagaag 49  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  44061117 ttattttatcttttgctatagaaatagcttatacagaag 44061155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49587000 - 49587042
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttata 43  Q
    ||||||||||||||||||||||||  |||||||| ||||||||    
T  49587000 cagtttgactttattttatcttttgttatagaaatagcttata 49587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22232812 - 22232751
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||| |||  |||| ||| ||||||||||  |||| ||||||||||    
T  22232812 cagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgata 22232751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40122836 - 40122897
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||||  ||| |||| |||||||||| ||| ||| ||| ||||    
T  40122836 cagtttgactttattttatcttttgttattgaaatagcttatacataagtactgatacgata 40122897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44284142 - 44284203
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||| |||||| ||||  |||||||| ||||||||||  || ||||||||||||    
T  44284142 cagtttgactttgttttattttttgttatagaaatagcttatacattagtacttatatgata 44284203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51278241 - 51278302
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||| || ||||  |||||||| ||||||||||  |||| ||||||||||    
T  51278241 cagtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgata 51278302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 402640 - 402680
Alignment:
Q  16 ttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    ||||||||||||||||||| |||||||||| |||| |||||    
T  402640 ttatctttttctatagaaatagcttatacataagcccttat 402680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 25964419 - 25964367
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||  |||| ||| |||||||||| ||| ||||||||||||    
T  25964419 tttattttatcttttgttataaaaatagcttatacaaaagaacttatatgata 25964367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 28779341 - 28779281
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||| ||||  |  |||| |||||||||||||| ||||| ||||||||||    
T  28779341 agtttgactttatttcatctgatgttataaaaacagcttatacaaaagcaattatatgata 28779281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7244688 - 7244627
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||| |||||||||||  |||||||| |||||||||| ||||||||||||||||    
T  7244688 cagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgata 7244627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 27481378 - 27481456
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||  ||||||| |||  |||||||| |||||||||| || ||||||||| ||| ||||||||||||||||    
T  27481378 cagtttgacttcgttttatcctttgttatagaaatagcttatacataaacacttatataataaacatttatgctataag 27481456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 47004072 - 47003995
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||| ||  |||||||| |||||| | | || ||||||||||||| |||||| |||||||||    
T  47004072 agtttgactttattttatctattgttatagaaatagcttacatataaacacttatatgataaacatttttgctataag 47003995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 8445269 - 8445196
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctata 77  Q
    |||| ||||||||||||||||  |||| ||| |||||||| | |||||||||||||||| ||| | ||||||||    
T  8445269 tttgtctttattttatcttttgttataaaaatagcttataaacaagcacttatatgataaacactaatgctata 8445196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 24973927 - 24973870
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgat 61  Q
    ||||| |||||||||||||||  |||||||| ||||| |||| |||||||||||||||    
T  24973927 tttgaatttattttatcttttgttatagaaatagcttttacataagcacttatatgat 24973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31341180 - 31341119
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||||  |||| ||| |||||||||| ||||| ||| ||||||    
T  31341180 cagtttgactttattttatcttttgttatacaaatagcttatacataagcatttagatgata 31341119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45593803 - 45593864
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| ||||  || ||||| |||||||||| ||||| ||||||||||    
T  45593803 cagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgata 45593864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 46213783 - 46213726
Alignment:
Q  7 gactttattttatctttttctatagaaacagcttatacagaagcacttatatgatata 64  Q
    ||||||||||||| ||||  |||||||| ||||| |||| ||||||||||||||||||    
T  46213783 gactttattttatattttgttatagaaatagcttttacataagcacttatatgatata 46213726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33894608 - 33894549
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgat 61  Q
    ||||||||||| ||||||||||||  |||||||| |||||||||| ||||||||| |||||    
T  33894608 cagtttgactt-attttatcttttgttatagaaatagcttatacataagcacttacatgat 33894549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3610824 - 3610883
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatga 60  Q
    ||||||| ||| ||||||||||||  | |||||| |||||||||| ||||||||||||||    
T  3610824 cagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatga 3610883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 5373205 - 5373150
Alignment:
Q  7 gactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||  |||||||| ||| |||||| ||||||||| ||||||    
T  5373205 gactttattttatcttttgttatagaaatagcatatacataagcacttacatgata 5373150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 49060523 - 49060440
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    |||||||||||||||| ||||  |||||||| |||||||||| ||  ||||||||||||  |  |||| ||||||||| |||||    
T  49060523 tttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataagccattatactataagtgcttaat 49060440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 992053 - 991995
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||| ||||||||||| ||||  |||||||||| |||||||  ||||||||||||||||    
T  992053 tttgtctttattttattttttgttatagaaacaacttatacgtaagcacttatatgata 991995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3241427 - 3241365
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatat 63  Q
    ||||||||||||||||| | ||||  |||||||| ||||| || | |||||||||||||||||    
T  3241427 cagtttgactttattttttattttgttatagaaatagcttctatataagcacttatatgatat 3241365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 35536090 - 35536032
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| |  |||||||| |||||||||| ||||  ||||||||||    
T  35536090 tttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgata 35536032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 39505943 - 39505857
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    |||||||||| ||||| ||||||| ||| | ||| | |||||||| || ||||||  ||||| ||||||||||||||| || |||||    
T  39505943 cagtttgactctatttaatcttttgctacaaaaataacttatacataaacacttacttgataaacatttatgctataaatgcttaat 39505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 753288 - 753365
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    |||||||||||||||| || ||||  |||||||| ||  |||||| |||| ||||||||||| |  ||||||||||||    
T  753288 cagtttgactttatttcatattttgttatagaaatagtgtatacacaagcgcttatatgataaatgtttatgctataa 753365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 7453485 - 7453526
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||||||| ||||||||| | ||||||||    
T  7453485 tttgactttattttatcttttgctatagaaaaatcttataca 7453526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5006593 - 5006637
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||||||||||  ||||| || ||||||||||    
T  5006593 cagtttgactttattttatcttttgttataggaatagcttataca 5006637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5276208 - 5276156
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcactta 55  Q
    |||||||||||| |||||||||  |||| ||| |||||||||| |||||||||    
T  5276208 gtttgactttatgttatcttttgttataaaaatagcttatacataagcactta 5276156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 5620183 - 5620256
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    ||||||||||||||| ||||| ||| |  |||||||||| || |||||||||||| |||| || ||| ||||||||    
T  5620183 tttgactttattttaccttttgctaaa--aacagcttatgcataagcacttatataatatgcacttaggctataag 5620256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 35808989 - 35809041
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcactt 54  Q
    ||||||||| |||||||||||||  |||||||| |||||||||| || |||||    
T  35808989 agtttgactatattttatcttttgttatagaaatagcttatacataaacactt 35809041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 37832230 - 37832278
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||||||| |||| ||||||||| || ||||||| ||||||||||    
T  37832230 actttattttatattttgctatagaaatagtttatacacaagcacttat 37832278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 39908081 - 39908150
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgcta 75  Q
    ||||||||||||||||||| || ||||  || ||||||||| | |||||||||||| |||||  ||||||||    
T  39908081 tttgactttattttatcttgttatata--aatagcttatactgcagcacttatatgttatacgcttatgcta 39908150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 45078253 - 45078205
Alignment:
Q  27 tatagaaacagcttatacagaagcacttatatgatatacatttatgcta 75  Q
    |||| ||| |||||||||| |||||||||||||||| || |||||||||    
T  45078253 tataaaaatagcttatacataagcacttatatgataaacgtttatgcta 45078205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 47007025 - 47006973
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||| |||||||  |||||||| || ||||||| ||||||||||||||||    
T  47007025 tttatttgatcttttgttatagaaaaagtttatacataagcacttatatgata 47006973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4191726 - 4191664
Alignment:
Q  1 cagtttgactttatttt-atctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||| |||||||  |||||||| |||||||||| ||||||||||||||||    
T  4191726 cagtttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgata 4191664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7342176 - 7342098
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||||||| || ||| ||  ||||||||| |||||||||| |||||  ||||||| |||||||    
T  7342176 cagtttgactttattttatcttttactgtagtaagtgcttatacataagcacttatctgataagcatttatactataag 7342098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 47970303 - 47970245
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatga 60  Q
    |||||||||| ||||||||||||  |||||||| |||||||||| ||||||||||||||    
T  47970303 agtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54325121 - 54325182
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||||||   ||||||| || ||||||| ||||||||||||||||    
T  54325121 cagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgata 54325182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 8422926 - 8422998
Alignment:
Q  6 tgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataa 78  Q
    |||||||||||||||||||| |||| ||| |||||||||| |||||| ||||||||| |   |||||||||||    
T  8422926 tgactttattttatctttttttataaaaatagcttatacataagcacatatatgatacatgattatgctataa 8422998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 36734878 - 36734818
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||| |||||  |||||||| || ||||||| ||||||||||||||||    
T  36734878 agtttgactttattttaccttttgttatagaaagagattatacataagcacttatatgata 36734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 22684603 - 22684661
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||| | |||  |||||||| |||||||||||||||| ||||||||||    
T  22684603 tttgactttattttaccgtttgttatagaaatagcttatacagaagcatttatatgata 22684661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 19040202 - 19040243
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  19040202 tttgactttattttatctttttctaaagaaatagcttataca 19040243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44319935 - 44319875
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||| ||||||||||||||||||| |||||||| || |||||||  |||||||||||||||    
T  44319935 cagttcgactttattttatcttttt-tatagaaatagtttatacatgagcacttatatgata 44319875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 51044544 - 51044597
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcactta 55  Q
    |||||||||||||||||||||||  |||||||| |||||||||| || ||||||    
T  51044544 agtttgactttattttatcttttgttatagaaatagcttatacataaacactta 51044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 4798649 - 4798697
Alignment:
Q  7 gactttattttatctttttctatagaaacagcttatacagaagcactta 55  Q
    ||||||||||||||||||  |||||||| |||||||||| |||||||||    
T  4798649 gactttattttatcttttgatatagaaatagcttatacataagcactta 4798697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 49940383 - 49940419
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagctta 41  Q
    |||||||||||||||| ||||||||||||||||||||    
T  49940383 ttgactttattttatcattttctatagaaacagctta 49940419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 51555956 - 51556012
Alignment:
Q  6 tgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||  ||||  || |||||||||| ||||||||||||||||    
T  51555956 tgactttattttatcttttgttataataatagcttatacataagcacttatatgata 51556012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 19422402 - 19422343
Alignment:
Q  3 gtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||| ||||||||  |||||||| | |||||||| ||||| ||||||||||    
T  19422402 gtttgactttattatatcttttgttatagaaataacttatacataagcatttatatgata 19422343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 21193981 - 21193922
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatat 63  Q
    ||||||||||||||||||||| ||||| ||| |||||||||| || ||| |||| |||||    
T  21193981 tttgactttattttatcttttactataaaaatagcttatacataatcacatataagatat 21193922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 27671919 - 27671994
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||||||||||||||||  | | |||| | |||||||| ||||||||||| ||||  || ||||||||||||    
T  27671919 tttgactttattttatcttttgttgtggaaataacttatacacaagcacttataagatagtcacttatgctataag 27671994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 44138538 - 44138495
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagca 51  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  44138538 actttattttatcttctgctatagaaacagcttatacataagca 44138495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 5219585 - 5219663
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagt 80  Q
    ||||| |||||||||||||||||  |||||| | ||| ||||||  |||||||||||||||  || ||||| |||||||    
T  5219585 agtttaactttattttatcttttattatagagatagcatatacatgagcacttatatgataatcaattatgttataagt 5219663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 40709475 - 40709521
Alignment:
Q  12 tattttatctttttctatagaaacagcttatacagaagcacttatat 58  Q
    |||||||||||||  ||||||||||||||||| | ||||||||||||    
T  40709475 tattttatcttttgttatagaaacagcttataaataagcacttatat 40709521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 969433 - 969490
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||| |||||  ||||||||  ||||||| | ||||||||||||||||    
T  969433 ttgactttattttaccttttattatagaaattgcttatagataagcacttatatgata 969490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 2980581 - 2980626
Alignment:
Q  27 tatagaaacagcttatacagaagcacttatatgatatacatttatg 72  Q
    |||||||| |||||||||| |||||||||||||||| ||| |||||    
T  2980581 tatagaaatagcttatacataagcacttatatgataaacacttatg 2980626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 3155582 - 3155545
Alignment:
Q  8 actttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  3155582 actttattttatcttttgctatagaaatagcttataca 3155545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 7749175 - 7749244
Alignment:
Q  10 tttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    |||||||| ||||||  |||||||| ||| |||||| || |||||||||| || ||| ||||||||||||    
T  7749175 tttattttctcttttattatagaaatagcgtatacataaacacttatatggtaaacacttatgctataag 7749244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 3175934 - 3175894
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatac 44  Q
    ||||||||||||||||||||| ||||||||  |||||||||    
T  3175934 tttgactttattttatcttttgctatagaagtagcttatac 3175894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 9680647 - 9680595
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||||||||||||||||  ||| |||| |||||||||| ||||| ||||    
T  9680647 tttgactttattttatcttttattatcgaaatagcttatacataagcatttat 9680595  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20907159 - 20907103
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttata 57  Q
    |||||| |||||||||||||||||  |||| ||| |||||||||| || ||||||||    
T  20907159 cagtttcactttattttatcttttcttatacaaatagcttatacataaacacttata 20907103  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 24160580 - 24160640
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||| ||||| |||||||||  |||||||| |||||||  | ||||||||||||||||    
T  24160580 agtttgaatttatattatcttttgttatagaaaaagcttatttataagcacttatatgata 24160640  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 32920487 - 32920560
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    ||||||||||||||||||| ||  ||| ||| ||||||| || || ||||||||||||||||  | ||||||||||    
T  32920487 tttgactttattttatcttgtt--ataaaaatagcttatccataaacacttatatgatataccctgatgctataag 32920560  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 48282119 - 48282058
Alignment:
Q  2 agtttgactttattttatcttt-ttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||||| || |||||||| ||||| |||| ||||||||||||||||    
T  48282119 agtttgactttattttatctttcttttatagaaatagcttttacataagcacttatatgata 48282058  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18434562 - 18434621
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatga 60  Q
    ||||||||||||||||||||||||  ||| |||| || | ||||||||||||||||||||    
T  18434562 cagtttgactttattttatcttttgttatggaaataggtaatacagaagcacttatatga 18434621  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 36602773 - 36602690
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaat 87  Q
    |||||||||||||||||| ||  | |||| | |||||||||| || ||||||||||||| | ||||||| |||||||| |||||    
T  36602773 tttgactttattttatctattgttgtagatatagcttatacataatcacttatatgataaaaatttatgatataagtgcttaat 36602690  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 45107607 - 45107533
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctata 77  Q
    |||||||||||||||||| ||| | |||||||| |||||||| | |||||||||||||||| |  |||||||||||    
T  45107607 agtttgactttattttatttttct-tatagaaatagcttatagataagcacttatatgatagatgtttatgctata 45107533  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 46499941 - 46499996
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatg 59  Q
    |||||||||||||||||||||  |||||||| |||||||| | |||||||||||||    
T  46499941 tttgactttattttatcttttcttatagaaatagcttatagataagcacttatatg 46499996  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 44032086 - 44032144
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||| |||||  ||||||||| ||||||||| || |||||||||||||    
T  44032086 tttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgata 44032144  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 45234180 - 45234110
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgct 74  Q
    |||||||||||||||||||||  |||||||| | | | |||| ||||||| |||||||| |||||||||||    
T  45234180 tttgactttattttatcttttattatagaaataacatgtacaaaagcactcatatgataaacatttatgct 45234110  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 49557120 - 49557066
Alignment:
Q  8 actttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||  |||||||| | ||||||||| |||||||||||||||    
T  49557120 actttattttatcttttgttatagaaataacttatacagcagcacttatatgata 49557066  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 6659677 - 6659628
Alignment:
Q  13 attttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||| ||||||||| || ||||||| ||||||||||||||||    
T  6659677 attttatcttttgctatagaaatagtttatacataagcacttatatgata 6659628  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23895322 - 23895261
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||| |||||||||||||||  |||||||| |||||||||| ||  ||||||||||||    
T  23895322 cagtttgaatttattttatcttttgttatagaaatagcttatacataataacttatatgata 23895261  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 23544727 - 23544779
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||| |||||||||||||| ||||||| |||||||||| |||| |||||    
T  23544727 tttgacttaattttatctttttccatagaaatagcttatacataagcgcttat 23544779  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 289223 - 289168
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatg 59  Q
    ||||||||||||||||||||| ||| | ||| |||||||||  |||||||||||||    
T  289223 tttgactttattttatcttttgctacaaaaatagcttatacttaagcacttatatg 289168  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 45999372 - 45999427
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||||||||| |||||||||  |||||||| ||||||||||  |||||||||    
T  45999372 cagtttgactttatcttatcttttgttatagaaatagcttatacatgagcacttat 45999427  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 871027 - 870970
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||| ||||||||||||  |||| ||| || ||||||| ||||||||||||||||    
T  871027 ttgacttaattttatcttttgttataaaaatagtttatacataagcacttatatgata 870970  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 13037836 - 13037791
Alignment:
Q  15 tttatctttttctatagaaacagcttatacagaagcacttatatga 60  Q
    ||||||||||  |||||||| |||||||||| ||||||||||||||    
T  13037836 tttatcttttgttatagaaatagcttatacataagcacttatatga 13037791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 15942305 - 15942264
Alignment:
Q  15 tttatctttttctatagaaacagcttatacagaagcacttat 56  Q
    |||||||||||||||| ||| |||||||||| ||||||||||    
T  15942305 tttatctttttctatataaatagcttatacataagcacttat 15942264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 23373378 - 23373435
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||||  |||||||| |||| ||||  ||||| ||||||||||    
T  23373378 ttgactttattttatcttttgatatagaaatagctaatacgtaagcagttatatgata 23373435  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30259571 - 30259632
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| ||||  |||||||| ||||| | || |||||||| |||||||    
T  30259571 cagtttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgata 30259632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 46980213 - 46980274
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||| ||||||||||||||||  |||| ||||| ||||| || | ||||||||||||||    
T  46980213 cagtttgtctttattttatcttttgatataaaaacaacttatgcatatgcacttatatgata 46980274  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4338635 - 4338555
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaa-gcacttatatgatatacatttatgctataagt 80  Q
    |||||||||||||||||||||| |  | |||| | | |||||||| || |||||||||||||| ||| |||| ||||||||    
T  4338635 cagtttgactttattttatcttctgttctagacataacttatacataaagcacttatatgataaacacttatactataagt 4338555  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 33339505 - 33339565
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||| |||| ||||||||||||  |||||||| |||||||||| || ||| |||||||||    
T  33339505 agtttaacttcattttatcttttggtatagaaatagcttatacataaacacctatatgata 33339565  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 42550226 - 42550166
Alignment:
Q  2 agtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||||||||||||||||||||||    |||||  |||||||||| |||||||| |||||||    
T  42550226 agtttgactttattttatcttttatcgtagaactagcttatacataagcacttgtatgata 42550166  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 50319274 - 50319234
Alignment:
Q  5 ttgactttattttatctttttctatagaaacagcttataca 45  Q
    ||||||||||||||||||||  |||||||| ||||||||||    
T  50319274 ttgactttattttatcttttgttatagaaatagcttataca 50319234  T

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Target: scaffold0072 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 4958 - 4867
Alignment:
Q  1 cagtttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    |||||||| ||| |||||| | ||  |||||||| |||||||| | | |||||||||||||| |||||||||||||||| | ||||| ||||    
T  4958 cagtttgaatttgttttatatattattatagaaatagcttatatataggcacttatatgatagacatttatgctataagcgcttaattaagt 4867  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 63372 - 63430
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    |||| ||||||||||||||||  |||| ||| |||||||| | ||||||||||||||||    
T  63372 tttgtctttattttatcttttgttataaaaatagcttataaacaagcacttatatgata 63430  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 27559 - 27501
Alignment:
Q  4 tttgactttattttatctttttctatagaaacagcttatacagaagcacttatatgata 62  Q
    ||||||||||||||||||| |  |||||||| | |||||||| ||||||||| ||||||    
T  27559 tttgactttattttatcttctgttatagaaataacttatacataagcacttacatgata 27501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 4309 - 4386
Alignment:
Q  3 gtttgactttattttatct-ttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataag 79  Q
    ||||||||||||||||||| |||| |||||||| || ||||| | |||||| ||||||| | ||| |||| |||||||    
T  4309 gtttgactttattttatctcttttttatagaaatagattatatataagcacatatatgagaaacacttatcctataag 4386  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 42592 - 42512
Alignment:
Q  12 tattttatctttttctatagaaacagcttatacagaagcacttatatgatatacatttatgctataagtggttaataaagt 92  Q
    |||||||||||||  ||||||||   |||||||| |||||||||||||||| |  | | ||||||||||| ||||| ||||    
T  42592 tattttatcttttgttatagaaatgacttatacataagcacttatatgataaatgtgtctgctataagtgtttaattaagt 42512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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