View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_low_16 (Length: 257)
Name: NF17756_low_16
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 43390226 - 43389968
Alignment:
| Q |
2 |
acagacaaaccatttactacatacatacacatacaaagccaccacaacccatagaaaataaatactaagatgcacacataccttacaacacaagaactgt |
101 |
Q |
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| T |
43390226 |
acagacaaaccatttcctacatacatacacatacaaagccaccacaacccatagaaaataaatactaagatgcacacttaccttacaacacaagaactgt |
43390127 |
T |
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| Q |
102 |
gctgcagaatcagtagcgagcagaggggaattcaactgtttaccaaccatacctgcaatagc---aaaaaataacacataaatatcgaattgtgacaaaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | | ||||||||||||| |
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| T |
43390126 |
gctgcagaatcagtagcgagcagaggggaattcaactgtttaccaaccatacctgcattagcaaaaaaaaataacacataaaaaacaaattgtgacaaaa |
43390027 |
T |
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| Q |
199 |
cagcaataaattacattcatttagctatgaaccaccaacacagacaccaagcacgaaac |
257 |
Q |
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| T |
43390026 |
cagcaataaattacattcatttagctatgaaccaccaacacagacaacaagcacgaaac |
43389968 |
T |
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