View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_low_2 (Length: 627)
Name: NF17756_low_2
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 37076293 - 37076903
Alignment:
| Q |
1 |
taccttggtttgtgaagtctagttctcccagaagcaccgcgtcggaagtggttataaactctactcaactcaccctgataatgagaagtaggggcttgtc |
100 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37076293 |
taccttggtttgtcaagtctagttctcccagaagaaccgcgtcggaagtggttataaactctactcaactcaccctgataatgagaagtaagggcttgtt |
37076392 |
T |
|
| Q |
101 |
tgagagtaacaatgtacacagcagtagttgcatcaacttgacaagaagaaggtattagaagcatcccgaaaaaacacaacagtaccactaaatgtacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37076393 |
tgagagtaacaatgtacacagcagtagttgcatcaacttgacaagaagaaggtattagaagcatcccgaagaaacacaacagtaccactaaatgtacaca |
37076492 |
T |
|
| Q |
201 |
atatgtgttcttctccatttgagttttggaatgcaaagctccaccaaacatgatcaagaaacttacaacaacaacaaatcttcagtagcatgcatagtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37076493 |
atatgtgttcttctccatttgagttttggaatgcaaagctccaccaaacatgatcaagaaacttacaacaacaacaaatcttcagtagcatgcatagtta |
37076592 |
T |
|
| Q |
301 |
gtctatcctcaagtgtaaagacttgacctttgaaaaaaccaatgagttttggttttgcagtctcttctggaccactagcctgaagtagaagtgcaaaatg |
400 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
37076593 |
gtctatcctcaagtgtaaagacttgatctttgaaaaaaccaatgagttttggttttgcagtctcttctggaccactagcctgaagtggaagtgcaaagtg |
37076692 |
T |
|
| Q |
401 |
gtgccaacctagcattgatgaacaaaaatagcaaggtttgttagtattaatagctcaagtatatgtccctaaaataacatgtaataattgagttggttat |
500 |
Q |
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| T |
37076693 |
gtggcaacctagcattgatgaacaaaaatagcaaggtttgttagtattaatagctcaagtatatgtccctaaaataacatgtaataattgagttggttat |
37076792 |
T |
|
| Q |
501 |
taatatatagtttccttatcatactttattgtatttctatacatatatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttt |
600 |
Q |
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| T |
37076793 |
taatatatagtttccttatcatactttattgtatttctatacatatatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttt |
37076892 |
T |
|
| Q |
601 |
tgagtgtattt |
611 |
Q |
| |
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||||| ||||| |
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| T |
37076893 |
tgagtatattt |
37076903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 368 - 489
Target Start/End: Original strand, 47244804 - 47244929
Alignment:
| Q |
368 |
tggaccactagcctgaagtagaagtgcaaaatggtgccaacctagcattgatgaacaaaaatagcaaggtttgttagt----attaatagctcaagtata |
463 |
Q |
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|||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
47244804 |
tggaccactagcctgaagtagaagtgcaaagtgaagccaaccttgcattgatgaacataaatagcaaggtttgttagtattaattaatagctcaagtata |
47244903 |
T |
|
| Q |
464 |
tgtccctaaaataacatgtaataatt |
489 |
Q |
| |
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|||| |||||||||||| |||||||| |
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| T |
47244904 |
tgtctctaaaataacatataataatt |
47244929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 542 - 604
Target Start/End: Original strand, 47245048 - 47245110
Alignment:
| Q |
542 |
catatatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttttgag |
604 |
Q |
| |
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| T |
47245048 |
catatatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttttgag |
47245110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 545 - 607
Target Start/End: Original strand, 32733338 - 32733397
Alignment:
| Q |
545 |
atatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttttgagtgt |
607 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32733338 |
atatataatagtggaaatgga---ttcctatgcaaatataaatataattaatcttttgagtgt |
32733397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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