View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_low_23 (Length: 212)
Name: NF17756_low_23
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41787830 - 41788042
Alignment:
| Q |
1 |
acgaaccacgtgttaaatttcatgaaccaccatggaaatcacaatagaaagaagtcacacctnnnnnnnnn-gttataacagactatatctatcaggtaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41787830 |
acgaaccacgtgttaaatttcatgaaccaccatggaactaacaatagaaagaagtcacacctaaaaaaaaaagttataacagactatatctatcaggtaa |
41787929 |
T |
|
| Q |
100 |
aaccacgtagtccaactctggaccctattcgacatatgtctcagtttttcattcattcgtctctctcagctctgccgtttttacttggactaagagcaac |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787930 |
aaccacgtagtccacctctggaccctattcgacatatgtctcagtttttcattcattcgtctctctcagctctgccgtttttacttggactaagagcaac |
41788029 |
T |
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| Q |
200 |
tccaatgctagtt |
212 |
Q |
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|||||| |||||| |
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| T |
41788030 |
tccaatcctagtt |
41788042 |
T |
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