View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_low_3 (Length: 591)
Name: NF17756_low_3
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 3077009 - 3077242
Alignment:
| Q |
20 |
gatataaaaatcatgtagttcatgtattagttagagttgcttgaaactatggttctacatcttggtttctcagctcatcatgcagacacaaattgatatt |
119 |
Q |
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| T |
3077009 |
gatataaaaatcatgtagtttatgtattagttagagttgcttgaaactatggttctacatcttggtttctcagctcatcatccagacacaaattgatatt |
3077108 |
T |
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| Q |
120 |
catgtatcctttttgtgatgcttttgtccacatatttgcataggtgtccaatgttctattttaaccatgggtatagattatattttgtgctattgaaagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
3077109 |
catgtatcctttttgtgatgcttttgtccacatatttgcataggtgtccaatgttctattttgatcatgggaatagattatattttgtgctattgaaagt |
3077208 |
T |
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| Q |
220 |
tgagaatttattctgatattgatatggatgtatt |
253 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3077209 |
tgagaatttattctgatattgatatggatgtatt |
3077242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 255 - 396
Target Start/End: Original strand, 3077277 - 3077418
Alignment:
| Q |
255 |
caggatacgtttcaagagcttatattttaattatctatgctaaagtcgtaatttgataatgctatatgttattcattttcttatatctataccatggaag |
354 |
Q |
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| T |
3077277 |
caggatacatttcaagagcttatattttaattatctatgctaaaatcgtaatctgataatgctatatgttattcattttcttatatctatacaatggaag |
3077376 |
T |
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| Q |
355 |
aaaggggttcttacttatctacttctaagaatcactaatgat |
396 |
Q |
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| T |
3077377 |
aaaggggttcttacttatctacttctaagaatcactaatgat |
3077418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 510
Target Start/End: Original strand, 3077495 - 3077532
Alignment:
| Q |
473 |
agacttccataacccactaaacctccatagcagtagca |
510 |
Q |
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| T |
3077495 |
agacttccataacccactaaacctccatagcagtagca |
3077532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 4636471 - 4636328
Alignment:
| Q |
33 |
tgtagttcatgtattagttagagttgcttgaaactatggttctacatcttggtttctcagctcatcatgcagacacaaattgatattcatgtatcctttt |
132 |
Q |
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| T |
4636471 |
tgtagtttatgcattagtcagagttgcttgaaactatggttctacattttggttgctcaattgatcatccagacaagaattgatattcatgtatcctttt |
4636372 |
T |
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| Q |
133 |
tgtgatgcttttgtccacatatttgcataggtgtccaatgttct |
176 |
Q |
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| T |
4636371 |
tttgatgtttatctccacatatttgcataggtgtccaattttct |
4636328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 46008910 - 46009054
Alignment:
| Q |
32 |
atgtagttcatgtattagttagagttgcttgaaactatggttctacatcttggtttctcagctcatcatgcagacacaaattgatattcatgtatccttt |
131 |
Q |
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| T |
46008910 |
atgtagtttatgcattagtcaaagttgcttgaaactatggttctacattttggttgctcaattgatcaccaagataagaattgatattcatgtatcattt |
46009009 |
T |
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| Q |
132 |
ttgtgatgcttttgtccacatatttgcataggtgtccaatgttct |
176 |
Q |
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| T |
46009010 |
ttttgatgtttatctccacatatttgcataggtgtccaattttct |
46009054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 11505105 - 11505189
Alignment:
| Q |
263 |
gtttcaagagcttatattttaattatctat-gctaaagtcgtaatttgataatgctatatgttattcattttcttatatctatac |
346 |
Q |
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| T |
11505105 |
gtttcaagagattatattttaattatcttttgctaaaatcataatttgaatgtgatatatgttattcattttcttatatctatac |
11505189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 6097345 - 6097284
Alignment:
| Q |
115 |
atattcatgtatcctttttgtgatgcttttgtccacatatttgcataggtgtccaatgttct |
176 |
Q |
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| T |
6097345 |
atattcatatatcctttttctgatgtttatctccacatatttgcataggtgtccaattttct |
6097284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 6097206 - 6097156
Alignment:
| Q |
204 |
ttgtgctattgaaagttgagaatttattctgatattgatatggatgtattg |
254 |
Q |
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| T |
6097206 |
ttgtgctgttgaaaattgataatttattctgatacttatatggatgtattg |
6097156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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