View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17756_low_6 (Length: 431)
Name: NF17756_low_6
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 22 - 419
Target Start/End: Original strand, 16435239 - 16435636
Alignment:
| Q |
22 |
tacatcatttactttcttgttttacagtatttcttacatcatttatctatgtatcaattttgacatttgcttcattttcttgtgtttcagtggcaagaga |
121 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16435239 |
tacatcatttactttatttttttacagtatttcttacatcatttatctatgtatcaattttgacatttgcttcattttcttgtgtttcagtggcaagaga |
16435338 |
T |
|
| Q |
122 |
gttggaggaacaaggtttgctttgagaagccagattttgcaacacatggcctttgtacatactacattaatggttcaagcttctaagagttatatgtgag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16435339 |
gttggaggaacaaggtttgctttgagaagccagattttgcaacacatggcctttgtacatactacattaatggttcaagcttctaagagttatatgtgag |
16435438 |
T |
|
| Q |
222 |
aatttgttgtaacttataagttcctccttataatagtccattgcatttgttcagcagattcctgttgaagcagcttaaagttgccatggaaatggatcat |
321 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16435439 |
aatgtgttgtaacttataagttcctccttataatagtccattgcatttgttcagcagattcctgttgaagcagcttaaagttgccatggaaatggatcat |
16435538 |
T |
|
| Q |
322 |
aagtataacaacaatgttcaatggttttgtaatgttataggcttcaagattgttctctaagtggtgctatgacatgttcatataagttttgtcagaat |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
16435539 |
aagtataacaacaatgttcaatggttttgtaatgttataggcttcaagattgttctctaggtgatgctatgacatgttaatataagttttgtcagaat |
16435636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 16435199 - 16435249
Alignment:
| Q |
16 |
attatatacatcatttactttcttgttttacagtatttcttacatcattta |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16435199 |
attatatacatcatttactttcttgttttacagtatttcttacatcattta |
16435249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University