View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_low_7 (Length: 423)
Name: NF17756_low_7
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 30107748 - 30107366
Alignment:
| Q |
13 |
aaaatcatgacaagtacaaaccacaaccaatagacatctatactcttcaattcaatgtgtctagtgtctaacatgtgtacatggtcacatgtgattacat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
30107748 |
aaaatcatgacaagtacaaaccacaaccaatagacatctatactcttcaattcaatgtggctggtgtctaacatgtgtacatggtcacatgtgattacat |
30107649 |
T |
|
| Q |
113 |
ttaatcactttcaactttttaaattattatcagtatcttcgtgtca-gtgttgtgtctggtgtccggacaggtccgcgcctgtgcttcatagatagaact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30107648 |
ttaatcactttcaactttttaaattattatcagtatctacgtgtcaagtgttgtgtctggtgtccggacaggtccgcgcctgtgcttcatagatagaact |
30107549 |
T |
|
| Q |
212 |
aacctggatttagagtagagtccttccattgaaggagtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30107548 |
aacctggatttagagtagagtccttccattgaaggagtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctca |
30107449 |
T |
|
| Q |
312 |
aaaacttcgaataagcctccgacgtttcagccacacccatcaaccaaaccttctcgccataaacctccaacaatctccccaac |
394 |
Q |
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| T |
30107448 |
aaaacttcgaataagcctccgacgtttcagccacacccatcaaccaaaccttctcaccataaacctccaacaatctccccaac |
30107366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 25773977 - 25773872
Alignment:
| Q |
213 |
acctggatttagagtagagtccttccattgaaggagtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctcaa |
312 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||| | | |||||||||| |||| || || ||| |||||||||||||| |
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| T |
25773977 |
acctggatttagagtatagtccttccatagaaggagtagcagatgtcacaggcaaaacatgcaaatccaaatctttttcaacattaggaaacaacctcaa |
25773878 |
T |
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| Q |
313 |
aaactt |
318 |
Q |
| |
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|||||| |
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| T |
25773877 |
aaactt |
25773872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 20691335 - 20691292
Alignment:
| Q |
133 |
aaattattatcagtatcttcgtgtcagtgttgtgtctggtgtcc |
176 |
Q |
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| T |
20691335 |
aaattattatcagtttctacgtgtcagtgttgtgtccggtgtcc |
20691292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 27531849 - 27531893
Alignment:
| Q |
98 |
cacatgtgattacatttaatcactttcaactttttaaattattat |
142 |
Q |
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||||| |||||||||||||||||||||| |||| |||||||||| |
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| T |
27531849 |
cacatttgattacatttaatcactttcattttttcaaattattat |
27531893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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