View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17756_low_8 (Length: 393)
Name: NF17756_low_8
Description: NF17756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17756_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 48730382 - 48730014
Alignment:
| Q |
9 |
agcacagatgggagatatagacttgctatacaaactgattcaaatggatccttacatcttagaacgctataatttaataccatttgttgatactcctttg |
108 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730382 |
agcacaaatgggagatatagacttgctattcaaactgattcaaatcgatccttacatcttagaacgctataatttaataccatttgttgatactcctttg |
48730283 |
T |
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| Q |
109 |
catattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtccca |
208 |
Q |
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| T |
48730282 |
catattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtccca |
48730183 |
T |
|
| Q |
209 |
tacatcttgctttacaaaacaaatatcacagaatggtttgtcgctttgtagatattaataaagatcttgtccgagtcaaagggatagagggtctaactcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
48730182 |
tacatcttgctttacaaaacaaatatcacagaatggtttgtcgctttgtagatattaataaagaccttgtccgagtcaaagggagagagggtctaactcc |
48730083 |
T |
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| Q |
309 |
attgcatattgctactcaaactggaaactttgatcttgtagtaaaattcctgtctgtttgtccaggttg |
377 |
Q |
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| T |
48730082 |
attgcatattgctactcaaactggaaactttgatcttgtagtaaaattcctgtttgtttgtccaggttg |
48730014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 4818941 - 4819091
Alignment:
| Q |
80 |
atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg |
179 |
Q |
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| T |
4818941 |
atttaataccatttgttgaaactcctttgcatattgctgcatctatgggtcatctccaatttgcctccgagattatgaagttaaaaccttcatttgcttg |
4819040 |
T |
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| Q |
180 |
gaaactaaacgagtatggactcagtcccatacatcttgctttacaaaacaa |
230 |
Q |
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| T |
4819041 |
gaagctaaatcaacaaggattcagtcctatccatcttgctatgcaaaacaa |
4819091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 31040851 - 31040743
Alignment:
| Q |
80 |
atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg |
179 |
Q |
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| T |
31040851 |
atttaattccatttgttgaaactcctctgcatatagctgcatctatgggacatgttcaatttgccactgaaattatgagattgaaaccttcatttgcatg |
31040752 |
T |
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| Q |
180 |
gaaactaaa |
188 |
Q |
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||| ||||| |
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| T |
31040751 |
gaagctaaa |
31040743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 31076001 - 31075952
Alignment:
| Q |
139 |
tttgccactgagattatgagactaaaaccttcatttgcttggaaactaaa |
188 |
Q |
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| T |
31076001 |
tttgccactgaaattatgagattgaaaccttcatttgctttgaagctaaa |
31075952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 28865156 - 28865196
Alignment:
| Q |
80 |
atttaataccatttgttgatactcctttgcatattgctgca |
120 |
Q |
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| T |
28865156 |
atttaataccatttgttgaaactcctttacatatcgctgca |
28865196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 30648008 - 30648044
Alignment:
| Q |
84 |
aataccatttgttgatactcctttgcatattgctgca |
120 |
Q |
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| T |
30648008 |
aataccatttgttgaaactcctttacatattgctgca |
30648044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 26087599 - 26087519
Alignment:
| Q |
139 |
tttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtcccatacatcttgct |
219 |
Q |
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||||||||||| ||||||| | |||||||||| ||||||||||||||| || | ||| |||||||||| ||||||||| |
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| T |
26087599 |
tttgccactgaaattatgaatttgaaaccttcatatgcttggaaactaaatcagcaaggattcagtcccatccatcttgct |
26087519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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