View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17757_low_14 (Length: 232)
Name: NF17757_low_14
Description: NF17757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17757_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 45105724 - 45105936
Alignment:
| Q |
1 |
ataatccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactccctgatgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45105724 |
ataatccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactgcctgatgtca |
45105823 |
T |
|
| Q |
101 |
aagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaaatcttcatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45105824 |
aagcaagagtgttggaaaatgaagtactcattgagatccattgtgagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaaatcttcatct |
45105923 |
T |
|
| Q |
201 |
tattgtcactgcc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45105924 |
tattgtcactgcc |
45105936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 45132066 - 45132222
Alignment:
| Q |
56 |
caaattctgatcaggattgttgtaaatcatcactccctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaa |
155 |
Q |
| |
|
|||| |||||||||||||| || |||||| ||||| |||||| ||||||||| | |||||||||| ||||||||| |||| || ||| |||||||||| |
|
|
| T |
45132066 |
caaactctgatcaggattgctgcaaatcaccactctttgatgttaaagcaagaataatggaaaatgaggtactcattcagatgcactgtgagaaggaaaa |
45132165 |
T |
|
| Q |
156 |
tggcattgagatcaaaatattgaatttgcttgaaaatcttcatcttattgtcactgc |
212 |
Q |
| |
|
|| ||||||||||||||||| || |||| ||||||||| |||| |||||||||| |
|
|
| T |
45132166 |
tgacattgagatcaaaatatataacgtgctagaaaatcttgatctctttgtcactgc |
45132222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 45113266 - 45113373
Alignment:
| Q |
91 |
cctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaa |
190 |
Q |
| |
|
||||||||||||| | ||||||||| ||| | |||||||| | ||| ||||| ||||||||||||||||| | |||||||||| | ||||| ||| |
|
|
| T |
45113266 |
cctgatgtcaaagtgaaagtgttggagaataatatactcatttacatcaattgtgagaaggaaaatggcattcaacacaaaatattggacatgcttcaaa |
45113365 |
T |
|
| Q |
191 |
atcttcat |
198 |
Q |
| |
|
|||||||| |
|
|
| T |
45113366 |
atcttcat |
45113373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University