View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17757_low_16 (Length: 225)
Name: NF17757_low_16
Description: NF17757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17757_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 52109085 - 52109297
Alignment:
| Q |
1 |
agcttagaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52109085 |
agcttggaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaat |
52109184 |
T |
|
| Q |
101 |
atggagtgtggtgaaaatgaagaaggtggcttcaagtgtgaagaaaacagtgttcctaaagaaattttgaggtttcaaaagagtaatgaattaagcataa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52109185 |
atggagtgtgatgaaaatgaagaaggtgacttcaagtgtgaagaaaacagtgttcctaaagaaattttgaggtttcaaaagagtaatgaattaagcataa |
52109284 |
T |
|
| Q |
201 |
gtcaccacaggtt |
213 |
Q |
| |
|
||||||| |||| |
|
|
| T |
52109285 |
ttcaccaccggtt |
52109297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 44526207 - 44526294
Alignment:
| Q |
18 |
attgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatgga |
105 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||||| |||||| |
|
|
| T |
44526207 |
attgcgtgatgagaatatagtgaggaattttcttcttgtgagcattgatttgatagaggaagtgaagcactgggtgcagaattatgga |
44526294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University