View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17757_low_6 (Length: 347)
Name: NF17757_low_6
Description: NF17757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17757_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 50531465 - 50531268
Alignment:
| Q |
6 |
aaaggacttgtggattaagttatccacttaatgcataacatgggtagaannnnnnnnnnnctttggtaaacacggtcagcaatctattatggctaaagga |
105 |
Q |
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| T |
50531465 |
aaaggacttgtggattaagttatccacttaatgcataacatggttagaattttttttt--ctttggtaaacacggtcagcaatctattatggctaaagga |
50531368 |
T |
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| Q |
106 |
atcaattttttaaaatttaaggaaagtcctcagaaatttgacttgtaataaaagttttgagctgtaaaaggtatagacttcaaatttcatttccgtaagc |
205 |
Q |
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| T |
50531367 |
atcaaatttttaaaatttaaggaaagtcctcagaaatttgacttgtaataaaagttttgagctgtaaaaggtatagacttcaaatttcatttccgtaagc |
50531268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 222 - 336
Target Start/End: Complemental strand, 50531225 - 50531111
Alignment:
| Q |
222 |
ttgaatgaaggtcatatttacttgcatgcgaccaatctaagtggtaagggtttgtatttaagtaaatagttttctttttaacaaaaataaaacgatggtt |
321 |
Q |
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| T |
50531225 |
ttgaatgaaggtcatatttacttgcatgcgaccaatctaagtggtaagggtttgtatttaagtaaatagttttctttttaacaaaaataaaatgatggtt |
50531126 |
T |
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| Q |
322 |
aaaggttcatttcat |
336 |
Q |
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| T |
50531125 |
aaaggttcatttcat |
50531111 |
T |
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