View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_1 (Length: 817)
Name: NF17758_high_1
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 407 - 800
Target Start/End: Complemental strand, 25493560 - 25493178
Alignment:
| Q |
407 |
gtttaaatttaccaaaaaggacatcaatcatacttgaatttcatagaacttaccatttcaggatcttactggcatatgcagcctttgcattaaaatctat |
506 |
Q |
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|||||||| |||| ||||| |||||||||||| | |||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |
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| T |
25493560 |
gtttaaatctacctaaaagaacatcaatcatattagaatctcatagaacttaccatttcaggatcttactggtatgtgcaacctttgcattaaaatctat |
25493461 |
T |
|
| Q |
507 |
cgaaatgccaccatttctaaggaaattacgagagttgcagccattaattcagagtcaatgtctcgaggagaataacaccgaagtgcaggcccagatcgag |
606 |
Q |
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||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25493460 |
cgaaatgccaccatttctaaggaaactgcgag--ttgcatccattaattcagagtcaatgtctcgaggagaataacatcgaagtgcaggcccagatcgag |
25493363 |
T |
|
| Q |
607 |
taccacatactaaagcaaaatgaatgagaggctctgggaaagagagggccacctaacnnnnnnnnccgagtcatgcgtgagcatcacgtcagtatagctt |
706 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| |||| |||||||| |
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| T |
25493362 |
taccacatactaaagcaaagtgaatgagaggctctggaaaagagagggccacctaacaaaaata--caagtcatgcgtgagcatcaagtcaatatagctt |
25493265 |
T |
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| Q |
707 |
tgttgatgaagtaacttcatggtgaaagcatacatgcgaaacagaaaaagttaaaccttttctcacccctctcacacatttacaaataaattac |
800 |
Q |
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| T |
25493264 |
tgctgatgaagtaacttcatggtgaaagcatacatgc-------caaaaggtaaaccttttctcacccctctcacacatatacaaataacttac |
25493178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 25494329 - 25494062
Alignment:
| Q |
1 |
gattgacacatgcttcataacctctacctcattcttgccaaaatctacactgaacctgaatattcacaacaaaaaatgttagaattcccaaaaattgtca |
100 |
Q |
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| T |
25494329 |
gattgacacatgcttcataacttctacctcattcttgccaaaatctacactgaacctgaatattcataacaaaaaatgttagaattcccaaaaattgtca |
25494230 |
T |
|
| Q |
101 |
ttttttgtcttaatcttttaattttaaagaaaagagac----gtaatctggcgtttgatcagagataaataaagtttgctcagccaaaaatcaaactcaa |
196 |
Q |
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||||||||||||||| |||| ||||| ||||||||||| ||||| | ||||||| || | |||||||||||||| | |||||| |||||||||| |
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| T |
25494229 |
ttttttgtcttaatcctttagttttagagaaaagagactctgataatccgaaatttgatcggacacaaataaagtttgcttaaccaaaattcaaactcaa |
25494130 |
T |
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| Q |
197 |
attctctcgagtagtttgtccttaactgaagttcaataaccacttcattgaacccaacattaaatacaccat |
268 |
Q |
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| T |
25494129 |
atcctctcgagtagttcgtccttaactgaaggtcaataatcac----ttgaacccaatattaaatacaccat |
25494062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28225912 - 28225970
Alignment:
| Q |
1 |
gattgacacatgcttcataacctctacctcattcttgccaaaatctacactgaacctga |
59 |
Q |
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| T |
28225912 |
gattgacacatgcttcataacctctacctcattcttgccaaaatctacactgaacctga |
28225970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 451 - 661
Target Start/End: Complemental strand, 33184643 - 33184435
Alignment:
| Q |
451 |
agaacttaccatttcaggatcttactggcatatgcagcctttgcattaaaatctatcgaaatgccaccatttctaaggaaattacgagagttgcagccat |
550 |
Q |
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|||||| ||||||| || ||||| ||| ||||||||| |||||| | ||||| ||| || || ||| |||| ||||||||||||| ||||| ||| |
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| T |
33184643 |
agaactaaccatttaagaatcttgctgacatatgcagtctttgccgtcaaatcaatcacaagacctccacttcttaggaaattacgag--ttgcatccaa |
33184546 |
T |
|
| Q |
551 |
taattcagagtcaatgtctcgaggagaataacaccgaagtgcaggcccagatcgagtaccacatactaaagcaaaatgaatgagaggctctgggaaagag |
650 |
Q |
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|||||| |||||| | || ||||||||| || ||||| |||||||||||||| || |||||||| |||||||||||||| | |||||| ||| ||| | |
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| T |
33184545 |
taattcttcgtcaatttttccaggagaatagcatcgaagggcaggcccagatcgggtgccacataccaaagcaaaatgaatcataggctcggggtaaggg |
33184446 |
T |
|
| Q |
651 |
agggccaccta |
661 |
Q |
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|| || ||||| |
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| T |
33184445 |
agtgcaaccta |
33184435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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