View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_15 (Length: 457)
Name: NF17758_high_15
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 25101455 - 25101638
Alignment:
| Q |
42 |
cttttactactgcaatttacggccccccgtttgaacgtctacccaagaagtggtaatgacatgttgcatcaaattgacgtgcaacaagaaaagagtctta |
141 |
Q |
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| T |
25101455 |
cttttactactgcaatttacggcctcccgtttgaacgtctacacaagaagtggtaatgacatgttgcatcaaattgacgtgcaacaagaaaagagtctta |
25101554 |
T |
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| Q |
142 |
caagaaaaacaaacatatttttagaatgatggaattgcccatgtgatgaaaaatgagttaataacattggta-attgtaggagg |
224 |
Q |
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| T |
25101555 |
caagaaaaacaaacatttttttagaatgatggaattgcccatgcgatgaaaaatgagttaatgacattggtatattgtaggagg |
25101638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 279 - 439
Target Start/End: Original strand, 25101693 - 25101843
Alignment:
| Q |
279 |
cattaagtggtttgtctgataatgtaagtttagaggtttagagtgtgcttattttcaagtctctgggtcaaatttttcggtagcagtaacttttatattg |
378 |
Q |
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| T |
25101693 |
cattaagtggtttgt---ataatgtaagtttagaggtttagagtgtgcttattatc-------tgggtcaaatatttcggtagcagtaatttttatattg |
25101782 |
T |
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| Q |
379 |
gatcagtctatataaaattttacttcgatttctattaagagtatgtttatttggacagtag |
439 |
Q |
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| T |
25101783 |
gatcagtctatataaaattttacttcgatttctattaagagtatgtttatttggacagtag |
25101843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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