View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_16 (Length: 443)
Name: NF17758_high_16
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 142 - 433
Target Start/End: Original strand, 4301471 - 4301752
Alignment:
| Q |
142 |
taattattgtttgtggtgctgagttagctggtctgaaaatttaagaggagtgctagtgtataactgtctcaaaccttttcnnnnnnnngttggattcttg |
241 |
Q |
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| T |
4301471 |
taattattgtttgtggtgctgagttagctggtctgaaaatttaagaggagtgctagtgtataactgtctcaaacctttt--tttttttgttggattcttg |
4301568 |
T |
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| Q |
242 |
tttcttcctcgttcttttgcaaaaatattgaatttttactcatatgtttgtttatgtttctacagaattgctgcaaaggcaccatatcaaacaagtaacc |
341 |
Q |
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| T |
4301569 |
tttcttcctcgttcttttgcaaaaatattgaatttttactgatatgtttgtttatgtttctacagaattgctgcaaaggcaccatatcaaacaagtaacc |
4301668 |
T |
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| Q |
342 |
caacaaaccttaataagccaattaacgaattcatgtcatggctctccttagcaccacaagaccacaaatcagaatgtagctccacctctgtg |
433 |
Q |
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| T |
4301669 |
caacaaaccttaataagccaattaacgaattcatgtcatggctctccttggc--------accacaaatcagaatgtagctccacctctgtg |
4301752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 273 - 433
Target Start/End: Original strand, 4296112 - 4296281
Alignment:
| Q |
273 |
atttttactcatatgtttgtttatgtttctacagaattgctgcaaaggcaccatatcaaacaagtaacccaacaaaccttaataagccaattaacgaatt |
372 |
Q |
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| T |
4296112 |
atttttactgatatctttgtttatgtttctacagaattgctgctagggcaccatatcaaacaagtaaccaaaaaaaccataataagccaattaatgaatt |
4296211 |
T |
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| Q |
373 |
catgtcatggctctcctt---------agcaccacaagaccacaaatcagaatgtagctccacctctgtg |
433 |
Q |
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| T |
4296212 |
catgtcatggctctccttggcaccacaatcaccacaagaccacagatcagaatgtagctccagctctgtg |
4296281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 400
Target Start/End: Original strand, 4307346 - 4307463
Alignment:
| Q |
283 |
atatgtttgtttatgtttctacagaattgctgcaaaggcaccatatcaaacaagtaacccaacaaaccttaataagccaattaacgaattcatgtcatgg |
382 |
Q |
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| T |
4307346 |
atatgtttgtttatgcttctgcagaattgctgccaaggcaccatatcaaacaagcaatccaacaaccattaataaaccaattgatgaatctatgacatgg |
4307445 |
T |
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| Q |
383 |
ctctccttagcaccacaa |
400 |
Q |
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| T |
4307446 |
ctctctttggcaccacaa |
4307463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 4311923 - 4312022
Alignment:
| Q |
304 |
cagaattgctgcaaaggcaccatatcaaacaagtaacc---caacaaaccttaataagccaattaacgaattcatgtcatggctctccttagcaccacaa |
400 |
Q |
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| T |
4311923 |
cagaattgctgcaaaggcaccttatcaaacaagtaatccagcagcattccttaataagccaattgatgaatccatgtcatggctatccttggcaccacaa |
4312022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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