View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17758_high_18 (Length: 420)

Name: NF17758_high_18
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17758_high_18
NF17758_high_18
[»] chr5 (20 HSPs)
chr5 (55-403)||(33112070-33112418)
chr5 (160-294)||(6273128-6273262)
chr5 (83-292)||(13956932-13957141)
chr5 (79-294)||(14351825-14352041)
chr5 (162-296)||(32383859-32383993)
chr5 (79-294)||(6459707-6459923)
chr5 (161-296)||(35456505-35456640)
chr5 (194-295)||(8761097-8761198)
chr5 (194-295)||(35758034-35758135)
chr5 (171-295)||(29823256-29823380)
chr5 (147-294)||(18942249-18942397)
chr5 (194-294)||(36745870-36745970)
chr5 (194-294)||(38040623-38040723)
chr5 (194-294)||(40143904-40144004)
chr5 (193-300)||(14635339-14635446)
chr5 (193-294)||(3752454-3752555)
chr5 (193-294)||(27194774-27194875)
chr5 (147-294)||(17644161-17644309)
chr5 (232-294)||(389695-389757)
chr5 (217-295)||(17421302-17421380)
[»] chr3 (25 HSPs)
chr3 (59-294)||(42907769-42908003)
chr3 (147-294)||(51537144-51537292)
chr3 (171-295)||(53351170-53351294)
chr3 (79-294)||(35054596-35054812)
chr3 (98-295)||(42217067-42217265)
chr3 (147-294)||(29727737-29727885)
chr3 (98-295)||(15100603-15100801)
chr3 (194-294)||(30465089-30465189)
chr3 (194-294)||(55258087-55258187)
chr3 (199-295)||(33634882-33634978)
chr3 (194-294)||(37599876-37599976)
chr3 (194-294)||(39850695-39850795)
chr3 (193-295)||(29025258-29025360)
chr3 (194-294)||(23241865-23241965)
chr3 (226-296)||(10259229-10259299)
chr3 (173-295)||(11018704-11018825)
chr3 (194-294)||(2849268-2849367)
chr3 (213-293)||(11412514-11412594)
chr3 (160-292)||(5123764-5123888)
chr3 (79-124)||(40918352-40918397)
chr3 (226-294)||(11676266-11676333)
chr3 (249-296)||(44201107-44201154)
chr3 (194-296)||(41462357-41462459)
chr3 (194-295)||(11574993-11575094)
chr3 (197-294)||(27002522-27002619)
[»] chr6 (11 HSPs)
chr6 (79-295)||(23595690-23595907)
chr6 (160-294)||(6817290-6817424)
chr6 (194-296)||(24068200-24068302)
chr6 (194-295)||(30269592-30269693)
chr6 (147-295)||(29419724-29419864)
chr6 (193-295)||(21289550-21289651)
chr6 (160-294)||(30426318-30426452)
chr6 (169-295)||(35166055-35166181)
chr6 (193-294)||(8464281-8464382)
chr6 (197-294)||(22351258-22351347)
chr6 (197-292)||(31513379-31513474)
[»] chr1 (34 HSPs)
chr1 (147-295)||(33690158-33690306)
chr1 (79-294)||(44410712-44410928)
chr1 (79-294)||(3014059-3014274)
chr1 (79-295)||(24638701-24638915)
chr1 (55-294)||(49241642-49241881)
chr1 (147-294)||(32364121-32364269)
chr1 (79-294)||(962382-962598)
chr1 (170-294)||(45774760-45774880)
chr1 (160-294)||(3252226-3252360)
chr1 (173-295)||(18032286-18032408)
chr1 (193-294)||(42866278-42866379)
chr1 (194-296)||(28234797-28234899)
chr1 (85-252)||(3794187-3794355)
chr1 (194-295)||(44257769-44257870)
chr1 (170-294)||(20725983-20726107)
chr1 (193-295)||(3355399-3355501)
chr1 (193-295)||(37034880-37034982)
chr1 (160-295)||(50323329-50323464)
chr1 (193-268)||(24984170-24984245)
chr1 (160-253)||(46545421-46545514)
chr1 (194-294)||(46535277-46535369)
chr1 (181-294)||(19554184-19554297)
chr1 (198-294)||(45193206-45193302)
chr1 (212-294)||(41983793-41983875)
chr1 (226-295)||(1846930-1846999)
chr1 (197-294)||(20117850-20117947)
chr1 (202-295)||(31986096-31986189)
chr1 (226-294)||(9293642-9293710)
chr1 (194-294)||(16914493-16914593)
chr1 (160-242)||(4225049-4225131)
chr1 (181-231)||(50358956-50359006)
chr1 (162-211)||(45484231-45484280)
chr1 (193-234)||(51727116-51727157)
chr1 (198-294)||(16914594-16914690)
[»] chr7 (28 HSPs)
chr7 (79-295)||(34191790-34192007)
chr7 (160-294)||(46170641-46170775)
chr7 (79-294)||(10992603-10992819)
chr7 (163-294)||(31813488-31813619)
chr7 (79-294)||(34259161-34259377)
chr7 (194-295)||(29983234-29983335)
chr7 (194-294)||(11734245-11734345)
chr7 (194-295)||(1582154-1582255)
chr7 (160-293)||(10198308-10198441)
chr7 (193-294)||(24096722-24096823)
chr7 (194-295)||(36099691-36099792)
chr7 (162-294)||(17833666-17833797)
chr7 (194-294)||(36858133-36858233)
chr7 (171-294)||(45269430-45269553)
chr7 (147-292)||(5418899-5419041)
chr7 (193-294)||(44605934-44606035)
chr7 (87-239)||(33610645-33610798)
chr7 (160-295)||(16216974-16217109)
chr7 (171-294)||(9822519-9822642)
chr7 (171-294)||(10724444-10724567)
chr7 (204-294)||(14801973-14802063)
chr7 (204-294)||(15248965-15249055)
chr7 (160-231)||(25069361-25069432)
chr7 (165-296)||(16198683-16198813)
chr7 (197-292)||(33628265-33628360)
chr7 (194-295)||(47423452-47423545)
chr7 (168-294)||(46004153-46004278)
chr7 (173-242)||(45498883-45498951)
[»] chr4 (23 HSPs)
chr4 (147-296)||(19916387-19916536)
chr4 (147-295)||(4414414-4414563)
chr4 (160-294)||(8132791-8132925)
chr4 (193-295)||(25232673-25232775)
chr4 (85-294)||(54822047-54822257)
chr4 (160-294)||(6354939-6355073)
chr4 (193-294)||(1936509-1936610)
chr4 (194-294)||(23611540-23611640)
chr4 (194-294)||(11792384-11792484)
chr4 (194-294)||(28359678-28359778)
chr4 (160-294)||(12704625-12704759)
chr4 (160-294)||(55675420-55675554)
chr4 (163-295)||(7362120-7362251)
chr4 (194-294)||(44352087-44352187)
chr4 (172-294)||(26203658-26203780)
chr4 (171-294)||(24394073-24394196)
chr4 (165-296)||(24776140-24776271)
chr4 (202-296)||(25510485-25510579)
chr4 (160-294)||(43245685-43245819)
chr4 (170-259)||(13428758-13428847)
chr4 (194-242)||(55497505-55497553)
chr4 (82-124)||(8132471-8132513)
chr4 (197-250)||(38519331-38519384)
[»] chr8 (26 HSPs)
chr8 (79-295)||(32493072-32493289)
chr8 (193-295)||(36833903-36834005)
chr8 (147-285)||(28761636-28761775)
chr8 (193-295)||(42063461-42063563)
chr8 (177-294)||(597234-597350)
chr8 (194-294)||(19726716-19726816)
chr8 (194-294)||(40485556-40485656)
chr8 (194-294)||(41726361-41726461)
chr8 (197-295)||(14910094-14910192)
chr8 (194-294)||(30360455-30360555)
chr8 (171-295)||(8014901-8015025)
chr8 (194-294)||(31008538-31008638)
chr8 (160-294)||(18656601-18656727)
chr8 (193-293)||(44056504-44056604)
chr8 (197-294)||(3655857-3655954)
chr8 (79-136)||(38712110-38712167)
chr8 (194-294)||(13487153-13487252)
chr8 (193-294)||(4455357-4455450)
chr8 (194-295)||(36658514-36658607)
chr8 (204-294)||(26403637-26403727)
chr8 (193-294)||(20821798-20821899)
chr8 (160-294)||(39375122-39375248)
chr8 (170-252)||(29867770-29867852)
chr8 (181-294)||(11031030-11031143)
chr8 (193-294)||(31893208-31893309)
chr8 (194-242)||(5970006-5970054)
[»] chr2 (29 HSPs)
chr2 (82-294)||(6065401-6065614)
chr2 (160-295)||(16106684-16106819)
chr2 (160-294)||(35305265-35305399)
chr2 (160-294)||(37484403-37484537)
chr2 (171-295)||(32878694-32878818)
chr2 (169-295)||(10810536-10810662)
chr2 (171-300)||(19881933-19882062)
chr2 (147-294)||(21800638-21800786)
chr2 (194-294)||(24128753-24128853)
chr2 (197-295)||(17513019-17513117)
chr2 (193-294)||(3988705-3988806)
chr2 (194-294)||(23293189-23293289)
chr2 (194-294)||(7153437-7153536)
chr2 (194-294)||(39678304-39678404)
chr2 (182-296)||(16457739-16457853)
chr2 (193-294)||(12365535-12365636)
chr2 (171-296)||(23250967-23251092)
chr2 (194-295)||(29523894-29523987)
chr2 (194-294)||(37255988-37256088)
chr2 (169-295)||(24934837-24934963)
chr2 (169-295)||(25683529-25683655)
chr2 (217-294)||(18540658-18540735)
chr2 (162-242)||(26606583-26606663)
chr2 (194-294)||(37314945-37315037)
chr2 (193-299)||(22315193-22315299)
chr2 (194-294)||(27905622-27905722)
chr2 (194-294)||(39061932-39062024)
chr2 (194-293)||(31900414-31900505)
chr2 (257-294)||(29781416-29781453)
[»] scaffold0116 (1 HSPs)
scaffold0116 (193-295)||(7838-7940)
[»] scaffold0231 (1 HSPs)
scaffold0231 (197-294)||(11039-11136)
[»] scaffold0070 (1 HSPs)
scaffold0070 (194-294)||(12721-12821)
[»] scaffold0242 (1 HSPs)
scaffold0242 (193-294)||(17854-17955)
[»] scaffold0036 (1 HSPs)
scaffold0036 (193-294)||(51909-52010)
[»] scaffold0712 (1 HSPs)
scaffold0712 (79-294)||(4815-5030)
[»] scaffold0709 (1 HSPs)
scaffold0709 (79-294)||(4835-5050)
[»] scaffold0131 (1 HSPs)
scaffold0131 (160-294)||(7842-7976)
[»] scaffold0043 (1 HSPs)
scaffold0043 (194-294)||(64345-64445)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 55 - 403
Target Start/End: Original strand, 33112070 - 33112418
Alignment:
Q  55 aagtattaatatacaaattgcatatttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatctt 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||       ||||||| |    
T  33112070 aagtattaatatacaaattgcatatttttagtttttaagtggtcgagtcatcgattcaatccgatttaatgtagttaaatacttaaaaaaagttaatcct 33112169  T
Q  155 aaacagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgc 254  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  33112170 aaacagagtcatctaaccgagttatacggtttaatccagttcagtcatgcagttcaatcaatgactcagtagttcgatcattaatccaataactcagtgc 33112269  T
Q  255 ccctgccgagtcgacgaccgaaccgagttttaaaactatgcaaatatgaccccaatctctcaacattagtatcactttgttttgtctgactttgtggaaa 354  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33112270 ccctgccgaatcgacgaccgagccgagttttaaaactatgcaaatatgaccccaatctctcaacattagtatcactttgttttgtctgactttgtggaaa 33112369  T
Q  355 tcattcatcgctgtctcattatatataaatattttgcatatgatccaaa 403  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33112370 tcattcatcgctctctcattatatataaatattttgcatatgatccaaa 33112418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 6273262 - 6273128
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||||||||||||||||||| |||||| || | |||||||||| |||||| | || ||||||||| |||||| |||||||||||| ||||||||||||||    
T  6273262 gagtcatctaaccgagttattcggtttgatccggttcagtcatacggttcgaccattgactcagtggttcgaccattaacccaataacccagtgcccctg 6273163  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||| ||||||||||||||||||    
T  6273162 ccgagtcgatgaccgagccgagttttaaaactatg 6273128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 83 - 292
Target Start/End: Complemental strand, 13957141 - 13956932
Alignment:
Q  83 tagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagttatac 181  Q
    ||||||||||| | ||||||||||||||||||||||||||||  |||||||||| |        |||| | ||| || |||||| || | |||||||| |    
T  13957141 tagtttttaagtgatcgagtcatcggttcaatccgatttaatctagttaaatacatcaaaaaa-ttaaacgtaagaccgagtcaacttatcgagttattc 13957043  T
Q  182 ggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgag 281  Q
    |||||||| | ||||||||||||||||||| || ||||||||| |||||| ||||||| || ||||||||| ||  ||||||||||| |||||| |||||    
T  13957042 ggtttaatccggttcagtcatgcggttcaaccagtgactcagtggttcgaccattaactcattgacccagtacctatgccgagtcgatgaccgagccgag 13956943  T
Q  282 ttttaaaacta 292  Q
    |||||||||||    
T  13956942 ttttaaaacta 13956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 14351825 - 14352041
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    |||| |||||||||| ||||||||||| ||||||| || |||||||    |||||||| |        |||||||||| || | ||||| ||||||||||    
T  14351825 ttttaagtttttaagtggtcgagtcattggttcaaccctatttaataagattaaatacctataaaaatttaatcttaagaccgggtcatataaccgagtt 14351924  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    || ||||||||| |  ||||||||||||||||||  ||||||||||| |||||| ||||||| || ||| ||| ||||||| ||||||||| |||||| |    
T  14351925 atccggtttaatccgattcagtcatgcggttcaactaatgactcagtggttcgaccattaactcactgatccaatgcccctaccgagtcgatgaccgagc 14352024  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  14352025 cgagttttaaaactatg 14352041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 162 - 296
Target Start/End: Original strand, 32383859 - 32383993
Alignment:
Q  162 gtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgcc 261  Q
    ||||||| |||||||||| ||||||||| || |||||||||||||||||| ||||||| |||| |||| |||||||||| | |||||||||  ||||  |    
T  32383859 gtcatcttaccgagttattcggtttaatccaattcagtcatgcggttcaaccaatgacacagtggttcaatcattaacctagtgacccagtatccctatc 32383958  T
Q  262 gagtcgacgaccgaaccgagttttaaaactatgca 296  Q
    ||||||| |||||| ||||||||||||||||||||    
T  32383959 gagtcgatgaccgagccgagttttaaaactatgca 32383993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 79 - 294
Target Start/End: Complemental strand, 6459923 - 6459707
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||  || |||||||||||||| ||||||| ||||   ||||||||| |        ||||| |||| || | ||||| | ||||||||    
T  6459923 tttttagtttttaaatggccgagtcatcggttcgatccgatctaatctggttaaatacctataaaaatttaatattaacaccgggtcatatgaccgagtt 6459824  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    ||  |||||||| |  |||||||||||||||||| || |||| |||| |||||| ||||||| || ||||||||| ||| |||||||||||||||||| |    
T  6459823 atctggtttaatccgattcagtcatgcggttcaaccagtgacccagtggttcgaccattaactcattgacccagtacccatgccgagtcgacgaccgagc 6459724  T
Q  278 cgagttttaaaactatg 294  Q
     ||||||||||||||||    
T  6459723 tgagttttaaaactatg 6459707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 35456640 - 35456505
Alignment:
Q  161 agtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgc 260  Q
    |||||| |||||||||||| ||||||||| |  |||||||||||||||||| || ||||||||| |||||| |||| | ||||||| ||||| ||||| |    
T  35456640 agtcatttaaccgagttatccggtttaatccgattcagtcatgcggttcaaccagtgactcagtggttcgaccattgatccaatgaaccagtacccctcc 35456541  T
Q  261 cgagtcgacgaccgaaccgagttttaaaactatgca 296  Q
    | ||| || |||||| ||||||||||||||||||||    
T  35456540 caagttgatgaccgagccgagttttaaaactatgca 35456505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 8761097 - 8761198
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||| | ||||||||| |||| |||||||||| |||||| |||||||||||||||||    
T  8761097 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacctattgacccagtacccccgccgagtcgatgaccgatccgagttttaaaactat 8761196  T
Q  294 gc 295  Q
    ||    
T  8761197 gc 8761198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 35758135 - 35758034
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  35758135 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccactgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactat 35758036  T
Q  294 gc 295  Q
    ||    
T  35758035 gc 35758034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 295
Target Start/End: Complemental strand, 29823380 - 29823256
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| ||||||||| | ||||||| ||||||||| |||||||| ||| | |||||| |||| ||| | ||||||||| |||| |||||||||| |    
T  29823380 ccgagttatccggtttaatccggttcagttatgcggttcgatcaatgattcactggttcgaccattgacctagtgacccagtacccccgccgagtcgatg 29823281  T
Q  271 accgaaccgagttttaaaactatgc 295  Q
    ||||| |||| ||||||||||||||    
T  29823280 accgagccgaattttaaaactatgc 29823256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 294
Target Start/End: Complemental strand, 18942397 - 18942249
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || ||||||| |||| ||||||| || |||||| |  |||||||||||||||||| || | |  |||| |||||| |||| ||||| ||    
T  18942397 ttaatcttaagaccgagtcatttaactgagttatccgatttaatccgattcagtcatgcggttcaaccagtcatccagtggttcgaccattgacccagtg 18942298  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||| || ||||| ||||||||| |||||| ||||||||||||||||||    
T  18942297 acccggtacccctaccgagtcgatgaccgagccgagttttaaaactatg 18942249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 36745870 - 36745970
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| | || ||||| |||| |||||| |||||||||||||||||    
T  36745870 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtactcccgccgaatcgatgaccgagccgagttttaaaactat 36745969  T
Q  294 g 294  Q
    |    
T  36745970 g 36745970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 38040723 - 38040623
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| || | ||||| |||| |||||| |||||||||||||||||    
T  38040723 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacctccgccgaatcgatgaccgagccgagttttaaaactat 38040624  T
Q  294 g 294  Q
    |    
T  38040623 g 38040623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 40144004 - 40143904
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| |||| ||||  | | |||||||||| |||||| |||||||||||||||||    
T  40144004 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgactcagtttctccgccgagtcgatgaccgagccgagttttaaaactat 40143905  T
Q  294 g 294  Q
    |    
T  40143904 g 40143904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 14635446 - 14635339
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||| | |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| |||| | | |||||||    
T  14635446 gttcagtcatgcggttcgaccaatgactcactggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgattctgaaaacta 14635347  T
Q  293 tgcaaata 300  Q
    || |||||    
T  14635346 tggaaata 14635339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 3752555 - 3752454
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||| |  ||||| |||| ||||| ||||||||| |||| |||||||||| |||||| |||| | | |||||||    
T  3752555 gttcagtcatgcggttcgaccaatgactcactgcttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgattctgaaaacta 3752456  T
Q  293 tg 294  Q
    ||    
T  3752455 tg 3752454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 27194774 - 27194875
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||| ||||| | ||||||| |||| |||| |  ||| ||||| | ||||||| |||| |||||||||| |||||| ||||||||||||||||    
T  27194774 gttcagtcatgtggttcgaccaatgacacagtggttcaactattgacccattaacccagtaccccagccgagtcgatgaccgagccgagttttaaaacta 27194873  T
Q  293 tg 294  Q
    ||    
T  27194874 tg 27194875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 294
Target Start/End: Original strand, 17644161 - 17644309
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || ||||||| |||||||||||| || |||||| |  |||||||||| ||||| | || |||  |||| |||||| |||| ||||| ||    
T  17644161 ttaatcttaagaccgagtcatttaaccgagttatccgatttaatccgattcagtcatgtggttcgaccattgatccagtggttcgaccattgacccagtg 17644260  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||  | ||||| |||| |||| ||||||  |||||||||||||||||    
T  17644261 acccgatacccctaccgaatcgatgaccgagtcgagttttaaaactatg 17644309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 389695 - 389757
Alignment:
Q  232 tcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||| ||||| ||||| ||| |||||||||| |||| |||||| ||||||||||||||||||    
T  389695 tcattgacccagtgacctagtacccctgccgaatcgatgaccgagccgagttttaaaactatg 389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 17421380 - 17421302
Alignment:
Q  217 gactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    |||||||| ||||||||| | || |||||| ||| | |||||  |||||||| |||||| |||||||||||||||||||    
T  17421380 gactcagtggttcgatcaatgactcaatgatccaatacccctctcgagtcgatgaccgagccgagttttaaaactatgc 17421302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 59 - 294
Target Start/End: Complemental strand, 42908003 - 42907769
Alignment:
Q  59 attaatatacaaattgcatatttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaaac 158  Q
    ||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||  ||||||||||||       ||||||| ||| |    
T  42908003 attaatatacaaattacatattttaa-tttttaagtggtcgagtcatcggttcaatccgatttaatctagttaaatacttaaaaaaagttaatcctaagc 42907905  T
Q  159 agagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccct 258  Q
     ||||||||||||||||| |||||||||||| | ||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||    
T  42907904 cgagtcatctaaccgagtaatacggtttaatccggttcagtcatgcggttcaaccaatgactcagtggttcgaccattaacctaatgacccagtgcccct 42907805  T
Q  259 gccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||||| ||||| ||||||||||||||||||    
T  42907804 gccgagtcgacaaccgagccgagttttaaaactatg 42907769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 147 - 294
Target Start/End: Original strand, 51537144 - 51537292
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || |||||||||||||||||||| ||||||||| |  ||||| |||||||||||| || |||| |||| |||||| |||||||||| ||    
T  51537144 ttaatcttaagaccgagtcatctaaccgagttatccggtttaatccgattcagacatgcggttcaaccagtgacccagtggttcgaccattaacccagtg 51537243  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||| | ||||||||||||||| |||||| ||||||||||||||||||    
T  51537244 acccaatacccctgccgagtcgatgaccgagccgagttttaaaactatg 51537292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 171 - 295
Target Start/End: Complemental strand, 53351294 - 53351170
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| ||||||||| | ||||||||||||||||||| ||| |||||||| |||| | |||||||| ||||||||||| ||||||||||||||| |    
T  53351294 ccgagttatccggtttaatccggttcagtcatgcggttcaaccaacgactcagtggttcaaccattaacctaatgacccagtacccctgccgagtcgatg 53351195  T
Q  271 accgaaccgagttttaaaactatgc 295  Q
    ||||| |||||||||||||||||||    
T  53351194 accgagccgagttttaaaactatgc 53351170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 35054596 - 35054812
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||| || || |||||||||||||||| |||||||  |||||||||| |        |||||| ||| || |||||| || | ||||||    
T  35054596 tttttagtttttaagtggccgggtcatcggttcaatccaatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtcaacttatcgagtt 35054695  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    ||  |||||||||| ||||||||||||||||||| || |||| || | |||||| ||||||| || ||||||||| ||| ||||||||||| |||||| |    
T  35054696 atttggtttaattcggttcagtcatgcggttcaaccagtgacccaatggttcgaccattaactcactgacccagtacccatgccgagtcgatgaccgagc 35054795  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  35054796 cgagttttaaaactatg 35054812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 98 - 295
Target Start/End: Original strand, 42217067 - 42217265
Alignment:
Q  98 cgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaaa-cagagtcatctaaccgagttatacggtttaattcagttc 196  Q
    |||||||| |||||||||||||||||| | ||||| ||| |        | ||||||||| | |||||||||| ||||||||| ||||||||| |  |||    
T  42217067 cgagtcattggttcaatccgatttaatcgggttaattacctataaatattaaatcttaaaaccgagtcatctagccgagttattcggtttaatccgattc 42217166  T
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    ||||||||||||||| || ||||||||| |||||| ||||||| |||||||||||| ||  | ||||||||| |||||| |||||||||||||||||||    
T  42217167 agtcatgcggttcaaccagtgactcagtggttcgaccattaactcaatgacccagtacctttaccgagtcgatgaccgagccgagttttaaaactatgc 42217265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 147 - 294
Target Start/End: Complemental strand, 29727885 - 29727737
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || |||||||||||| ||||||| ||||||||| |  ||||||||||||||||||  | ||||||||| |||| | |||||||||||||    
T  29727885 ttaatcttaagaccgagtcatctaactgagttatccggtttaatccgattcagtcatgcggttcaactagtgactcagtggttcaaccattaacccaatg 29727786  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||| | |||||||||| |||| |||||| ||||||||||||||||||    
T  29727785 acccaatacccctgccgaatcgatgaccgagccgagttttaaaactatg 29727737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 295
Target Start/End: Complemental strand, 15100801 - 15100603
Alignment:
Q  98 cgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaaa-cagagtcatctaaccgagttatacggtttaattcagttc 196  Q
    |||||||| |||||||||||||||||| | ||||| ||| |        ||||||||||| | ||||||| || ||||||||| ||||||||| |  |||    
T  15100801 cgagtcattggttcaatccgatttaatcgggttaattacctataaagatttaatcttaaaaccgagtcatttagccgagttattcggtttaatccgattc 15100702  T
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |  || |  |||||||| || ||| |||||||||||||||||||    
T  15100701 agtcatgcggttcaatcagtgactcagtggttcgaccattaacccaatgacccaatatccttatcgagtcgatgatcgagccgagttttaaaactatgc 15100603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 30465089 - 30465189
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| |||| ||||||||||||    
T  30465089 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgaattttaaaactat 30465188  T
Q  294 g 294  Q
    |    
T  30465189 g 30465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 55258087 - 55258187
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| ||||  ||||||||| |||||| |||||||||||||||||    
T  55258087 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccaccgagtcgatgaccgagccgagttttaaaactat 55258186  T
Q  294 g 294  Q
    |    
T  55258187 g 55258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 33634978 - 33634882
Alignment:
Q  199 tcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    ||||||||||| | |||||||||||| |||||| |||| ||||| | ||||||| |||| |||||||||| || |||||||||||||||||||||||    
T  33634978 tcatgcggttcgaccaatgactcagtggttcgaccattgacccattaacccagtacccccgccgagtcgatgatcgaaccgagttttaaaactatgc 33634882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 37599876 - 37599976
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| | ||| ||||||||| |||| ||| |||||| |||||| |||||||||||||||||    
T  37599876 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgatccattgacccagtacccccgccaagtcgatgaccgagccgagttttaaaactat 37599975  T
Q  294 g 294  Q
    |    
T  37599976 g 37599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 39850795 - 39850695
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||| ||||||||||| | |||||||||||| |||||| |||| ||||| ||||| ||| |||| |||||||||| |||||| |||||||||||||||||    
T  39850795 ttcaatcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactat 39850696  T
Q  294 g 294  Q
    |    
T  39850695 g 39850695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 29025360 - 29025258
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||| | |||| | |||| ||||| ||||||||| |||| |||||||||| |||||| | ||||||||||||||    
T  29025360 gttcagtcatgcggttcgaccaatgactcactggttcaaccattgacccattgacccagtacccccgccgagtcgatgaccgagctgagttttaaaacta 29025261  T
Q  293 tgc 295  Q
    |||    
T  29025260 tgc 29025258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 23241865 - 23241965
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||| ||||| |||||| |||| ||||| ||||||| | |||| |||||||||| |||||| |||| ||||||||||||    
T  23241865 ttcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccaatacccccgccgagtcgatgaccgagccgaattttaaaactat 23241964  T
Q  294 g 294  Q
    |    
T  23241965 g 23241965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 10259229 - 10259299
Alignment:
Q  226 gttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgca 296  Q
    |||||| |||||||||| ||||||||| |||| |||||||||| |||||| ||||||||||||||||||||    
T  10259229 gttcgaccattaacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatgca 10259299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 295
Target Start/End: Complemental strand, 11018825 - 11018704
Alignment:
Q  173 gagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgac 272  Q
    ||||||| ||||||||| | ||||||| ||||||||| | |||||||||| | ||| ||| ||| | ||| ||||||||| ||||  ||||||||| |||    
T  11018825 gagttatccggtttaatccggttcagttatgcggttcgaccaatgactcactggtttgattattgatccagtgacccagtacccca-ccgagtcgatgac 11018727  T
Q  273 cgaaccgagttttaaaactatgc 295  Q
    ||| |||||||||||||||||||    
T  11018726 cgagccgagttttaaaactatgc 11018704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 2849268 - 2849367
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||| |  ||||| |||||||||| |||||||||  |||  ||||||||| |||||| |||||||||||||||||    
T  2849268 ttcagtcatgcggttcgaccaatgactcaatgattcgaccattaacccattgacccagtatccc-accgagtcgatgaccgagccgagttttaaaactat 2849366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 11412514 - 11412594
Alignment:
Q  213 caatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||| |||||| || | ||||| ||||||| | ||| ||||||||||| |||||| |||||||||||||||||    
T  11412514 caatgactcagtggttcgaccaatgacccagtgacccaatacccttgccgagtcgatgaccgagccgagttttaaaactat 11412594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 292
Target Start/End: Complemental strand, 5123888 - 5123764
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||| |||||||||||| || ||  || || ||||||| ||||||||||||| |||||||||| | ||||        ||||| |||| |||| ||||||    
T  5123888 gagttatctaaccgagtcatccgagttgatccagttcattcatgcggttcaaccaatgactcaatggttc--------acccagtgactcagtacccctg 5123797  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||| | | |||||||||||||||||||||    
T  5123796 ccgagtcaatggccgaaccgagttttaaaacta 5123764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 40918397 - 40918352
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaat 124  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  40918397 tttttagattttaagtgatcgagtcatcggttcaatccgatttaat 40918352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 11676266 - 11676333
Alignment:
Q  226 gttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| || |||||||||||||||    
T  11676266 gttcgaccattgacccattgacccagtacccc-gccgagtcgatgaccgagccaagttttaaaactatg 11676333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 44201154 - 44201107
Alignment:
Q  249 cagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgca 296  Q
    ||||||| || ||||||||| |||||| ||||||||||||||||||||    
T  44201154 cagtgcctctaccgagtcgatgaccgagccgagttttaaaactatgca 44201107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 41462357 - 41462459
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    ||||||||||||||||||  | |||| |  | |||||| |||  || || ||||||||| ||  || |||||||| |||||| |||||||||||||||||    
T  41462357 ttcagtcatgcggttcaacaagtgacccgatggttcgaccatcgactcagtgacccagtacctatgtcgagtcgatgaccgagccgagttttaaaactat 41462456  T
Q  294 gca 296  Q
    |||    
T  41462457 gca 41462459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 11575094 - 11574993
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||| ||||||||| ||||||| |  | |||||| |||  |  |||||||||||| ||  ||||||||||| || |||  ||||||||||||||||    
T  11575094 ttcagtcacgcggttcaaccaatgacccgatggttcgaccatcgattcaatgacccagtacctatgccgagtcgatgatcgagtcgagttttaaaactat 11574995  T
Q  294 gc 295  Q
    ||    
T  11574994 gc 11574993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 27002619 - 27002522
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||| | |||| ||||||||  || |||||| | |||| ||||| |||| |||| ||| ||||||||| | | |||| ||||||||||||||||||    
T  27002619 agtcatacagttcgatcaatgatccaatagttcaaccattgacccagtgactcagtacccttgccgagtcaatgtccgagccgagttttaaaactatg 27002522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 79 - 295
Target Start/End: Complemental strand, 23595907 - 23595690
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaaa-cagagtcatctaaccgagtt 177  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||  ||||||||||||        ||||||||||| | | |||||||| |||||||    
T  23595907 ttttttgtttttaagtggccgagtcatcggttcaatccgatttaatctagttaaatacttataaaaaattaatcttaaaaccgggtcatctagccgagtt 23595808  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    ||  |||||||| |  || | ||||||||||||| |||||||||||| |||||| ||| |||||| ||||||||| |||||||||||||||  ||||| |    
T  23595807 atttggtttaatccgatttaatcatgcggttcaaccaatgactcagtggttcgaccatcaacccagtgacccagtacccctgccgagtcgatcaccgagc 23595708  T
Q  278 cgagttttaaaactatgc 295  Q
    ||||||||||||||||||    
T  23595707 cgagttttaaaactatgc 23595690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 6817424 - 6817290
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||||||||| |||| |||| ||||||||| |  || ||| ||||||||||| || ||||||||| |||||| |||||||||||||||||||| ||| |     
T  6817424 gagtcatctagccgaattattcggtttaatccgatttagttatgcggttcaaccagtgactcagtggttcgaccattaacccaatgacccagtaccctta 6817325  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||| ||||||||||||||||||    
T  6817324 ccgagtcgatgaccgagccgagttttaaaactatg 6817290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 24068200 - 24068302
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||| | |||| |||||||||| |||||| |||||||||||||||||    
T  24068200 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccaatacccccgccgagtcgatgaccgagccgagttttaaaactat 24068299  T
Q  294 gca 296  Q
    |||    
T  24068300 gca 24068302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 30269693 - 30269592
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | ||| |||||||| |||||| ||||||| || ||||||||| |||| |||||||||| |||||| |||||||||||||||||    
T  30269693 ttcagtcatgcggttcgaccaacgactcagtggttcgaccattaactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 30269594  T
Q  294 gc 295  Q
    ||    
T  30269593 gc 30269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 147 - 295
Target Start/End: Original strand, 29419724 - 29419864
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || |||||| ||||||||||||| || |||||| |  |||||||||||||||||| || ||||||||| ||| || ||||        |    
T  29419724 ttaatcttaagaccgagtcacctaaccgagttatccg-tttaatccgattcagtcatgcggttcaaccagtgactcagtggtttgaccatt--------g 29419814  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  29419815 acccagtacccctgccgagtcgatgaccgagccgagttttaaaactatgc 29419864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 21289651 - 21289550
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||| | |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| |||||| | |||||||    
T  21289651 gttcagtcatgcggttcgaccaatgactcactggttcgaccattgacccattgacccagtacccc-gccgagtcgatgaccgagccgagtatgaaaacta 21289553  T
Q  293 tgc 295  Q
    |||    
T  21289552 tgc 21289550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 30426452 - 30426318
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||||||||| |||||||||  ||||||||    |||| ||||||||||||| || ||||| ||| |||||| |||||||  | ||| ||||| |||       
T  30426452 gagtcatctatccgagttatttggtttaatctgattcaatcatgcggttcaaccagtgacttagtggttcgaccattaacttattgatccagtaccctgt 30426353  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||| |||| |||||||||||||    
T  30426352 ccgagtcgatgaccgagccgaattttaaaactatg 30426318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 35166055 - 35166181
Alignment:
Q  169 aaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcga 268  Q
    ||||||||||| || |||||| ||||||||| ||||||||||| ||||||  |||| |||| | || |||| || || |||||||    |||||||||||    
T  35166055 aaccgagttatccgatttaatacagttcagttatgcggttcaaccaatgatccagtggttcaaccaataactcagtggcccagtgatattgccgagtcga 35166154  T
Q  269 cgaccgaaccgagttttaaaactatgc 295  Q
     || |||  ||||||||||||||||||    
T  35166155 tgatcgattcgagttttaaaactatgc 35166181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 8464382 - 8464281
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||| | ||| |||||| ||||||| || ||||||||| |  ||||||||  || |||||| |||| |||||||||||    
T  8464382 gttcagtcatgcggttcgaccaatgatttagtggttcgaccattaactcagtgacccagtacatctgccgagctgatgaccgagccgaattttaaaacta 8464283  T
Q  293 tg 294  Q
    ||    
T  8464282 tg 8464281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 22351258 - 22351347
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||||||| | |||||||||||| |||||| ||||        ||||||||  ||| |||||||||| |||||| ||||||||||||||||||    
T  22351258 agtcatgcggttcgaccaatgactcagtggttcgaccatt--------gacccagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 22351347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 31513379 - 31513474
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||| | ||||||| || | |||| | |||| ||||| |||| |||| ||||| ||||||| | | |||| ||||||||||||||||    
T  31513379 agtcatgcggttcgaccaatgacccaatggttcaaccattgacccattgactcagtaccccttccgagtcaatgtccgagccgagttttaaaacta 31513474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 147 - 295
Target Start/End: Complemental strand, 33690306 - 33690158
Alignment:
Q  147 ttaatcttaaacagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatga 246  Q
    |||||| ||| | |||||||||||||||||||| ||||||||| |  |||| ||||||||||||| ||| |||||||| |||||| ||||||||||||||    
T  33690306 ttaatcctaagccgagtcatctaaccgagttattcggtttaatccgattcaatcatgcggttcaaccaacgactcagtggttcgaccattaacccaatga 33690207  T
Q  247 cccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    |||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  33690206 cccagtacccctgccgagtcgatgaccgagccgagttttaaaactatgc 33690158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 79 - 294
Target Start/End: Complemental strand, 44410928 - 44410712
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaaa-cagagtcatctaaccgagtt 177  Q
    ||||| ||||||||| || |||||||| |||||||||||||||||| | ||||| ||| |        ||||||||||| | |||||||||| |||||||    
T  44410928 ttttttgtttttaagtggccgagtcattggttcaatccgatttaatcgggttaattacctataaagatttaatcttaaaaccgagtcatctagccgagtt 44410829  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    || |||||||||    || ||||||||||||||| || ||||||||| |||||| |||||||||| ||||||||| ||| ||||||||||| ||||||||    
T  44410828 attcggtttaatctgatttagtcatgcggttcaaccagtgactcagtggttcgaccattaacccagtgacccagtacccttgccgagtcgatgaccgaac 44410729  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  44410728 cgagttttaaaactatg 44410712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 3014059 - 3014274
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    |||||||||||||||  |||||||||  ||||||||||||||||||  |||||||||| |        |||||||||| || | ||||| ||||||||||    
T  3014059 tttttagtttttaagtagtcgagtcacgggttcaatccgatttaatatagttaaatacctataaaaatttaatcttaagaccgggtcatttaaccgagtt 3014158  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    || ||||||||| | ||||||||||| ||||||| |||||||||||| |||||| |||||| ||| ||||||||| |||||||||||||||  | |||      
T  3014159 attcggtttaatccggttcagtcatgtggttcaaccaatgactcagtggttcgaccattaatccagtgacccagtacccctgccgagtcga-taacgaga 3014257  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  3014258 cgagttttaaaactatg 3014274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 295
Target Start/End: Complemental strand, 24638915 - 24638701
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||| || ||||||||||||||||||| |||||||  |||||||||| |        |||||| ||| || |||||| || ||||||||    
T  24638915 tttttagtttttaagtggccgagtcatcggttcaatcctatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtcaacttaccgagtt 24638816  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    || ||||||||| ||||||||||||||||||||| || |||| |   ||||||| ||||||| || ||||||| | ||| ||||||||||| |||||| |    
T  24638815 attcggtttaatccagttcagtcatgcggttcaaccagtgaccc---agttcgaccattaactcactgacccactacccatgccgagtcgatgaccgagc 24638719  T
Q  278 cgagttttaaaactatgc 295  Q
     |||||||||||||||||    
T  24638718 tgagttttaaaactatgc 24638701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 55 - 294
Target Start/End: Complemental strand, 49241881 - 49241642
Alignment:
Q  55 aagtattaatatacaaattgcatatttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatctt 154  Q
    ||||||||||||||||||| || |||||||||||||||| | | ||||||| | ||||||||||||||||  || ||||||| |        | |||| |    
T  49241881 aagtattaatatacaaattacaaatttttagtttttaagtgcttgagtcattgattcaatccgatttaatctagctaaatacctaaaaaaaatgaatcct 49241782  T
Q  155 aaacagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgc 254  Q
    || | ||||| ||||||||||||||  ||||||||   |||||| |||||||||||| ||| ||||| || |||||| |||||||||||||| |||||      
T  49241781 aagccgagtcgtctaaccgagttatttggtttaatcaggttcagccatgcggttcaaccaacgactcggtggttcgaccattaacccaatgatccagtat 49241682  T
Q  255 ccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||| ||| |||| |||||| |||| |||||||||||||    
T  49241681 ccctgtcgaatcgatgaccgagccgaattttaaaactatg 49241642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 147 - 294
Target Start/End: Complemental strand, 32364269 - 32364121
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || |||||||||||||||||||| ||||||||| |  |||||||||||||||||| || |||| |||| |||||| ||||||||||  |    
T  32364269 ttaatcttaagaccgagtcatctaaccgagttatccggtttaatccgattcagtcatgcggttcaaccagtgacccagtggttcgaccattaacccagcg 32364170  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||| | |||||| |||||||| |||||| |||| |||||||||||||    
T  32364169 acccaatacccctgtcgagtcgatgaccgagccgaattttaaaactatg 32364121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 962382 - 962598
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||  |||||||||| |        |||| | ||| ||  ||||| || ||||||||    
T  962382 tttttagtttttaagtgaccgagtcatcggttcaatccgatttaatctagttaaatacatcacaaaaattaaacgtaagaccaagtcaacttaccgagtt 962481  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    || ||||||||| | ||||||||||| ||||||| || ||||||||| |||||| |||||||  | ||||| ||| ||  ||||||||||| |||||| |    
T  962482 attcggtttaatccggttcagtcatgtggttcaaccagtgactcagtggttcgaccattaacttattgacctagtacctatgccgagtcgatgaccgagc 962581  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  962582 cgagttttaaaactatg 962598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 45774880 - 45774760
Alignment:
Q  170 accgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgac 269  Q
    |||||||||| ||||||||| | |||||||||||||| |||||||||||||| ||    |||||||||||||||||| ||||| | |||||||||||||     
T  45774880 accgagttattcggtttaatccggttcagtcatgcggctcaatcaatgactcggt----cgatcattaacccaatgatccagtacacctgccgagtcgat 45774785  T
Q  270 gaccgaaccgagttttaaaactatg 294  Q
    || ||||||||||||||||||||||    
T  45774784 gatcgaaccgagttttaaaactatg 45774760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 3252360 - 3252226
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||||| ||| ||||||||| ||||||||| | ||||||||||||||||||| || ||||||||| |||| | ||||||| || ||||||||| || ||     
T  3252360 gagtcaactagccgagttatccggtttaatccggttcagtcatgcggttcaaccagtgactcagtggttcaaccattaactcagtgacccagtacctcta 3252261  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||| ||||||||||||||||||    
T  3252260 ccgagtcgatgaccgagccgagttttaaaactatg 3252226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 173 - 295
Target Start/End: Complemental strand, 18032408 - 18032286
Alignment:
Q  173 gagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgac 272  Q
    ||||||| ||||||||| || ||||||||||| |||||| || ||||||||| |||||| ||||||| || ||| ||||| ||| |||||||||||||||    
T  18032408 gagttatccggtttaatccaattcagtcatgcagttcaaccagtgactcagtggttcgaccattaactcattgatccagtacccatgccgagtcgacgac 18032309  T
Q  273 cgaaccgagttttaaaactatgc 295  Q
    ||| |||||||||||||||||||    
T  18032308 cgagccgagttttaaaactatgc 18032286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 42866379 - 42866278
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| ||||||||||||||||    
T  42866379 gttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaacta 42866280  T
Q  293 tg 294  Q
    ||    
T  42866279 tg 42866278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 28234899 - 28234797
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||| | |||||| |||||||||||||||||    
T  28234899 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactat 28234800  T
Q  294 gca 296  Q
    |||    
T  28234799 gca 28234797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 252
Target Start/End: Complemental strand, 3794355 - 3794187
Alignment:
Q  85 gtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagttatacgg 183  Q
    |||||||||  ||||||||||| |||||||||||||||||    |||||||| |        |||||||||| |  | |||||||||||||||||| | |    
T  3794355 gtttttaagtagtcgagtcatcagttcaatccgatttaatatgattaaatacctataaaaatttaatcttaagatcgggtcatctaaccgagttattcag 3794256  T
Q  184 tttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagt 252  Q
    |||||    ||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  3794255 tttaaactggttcagtcatgcggttcaaccaatgactcagtggttcgaccattaacccaatgacccagt 3794187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 44257870 - 44257769
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | ||||||||| || |||||| |||| || || ||||||||| |||| |||||||||| |||||| |||||||||||||||||    
T  44257870 ttcagtcatgcggttcgaccaatgactcggtggttcgaccattgactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 44257771  T
Q  294 gc 295  Q
    ||    
T  44257770 gc 44257769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 20726107 - 20725983
Alignment:
Q  170 accgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgac 269  Q
    ||||||| |||||||||||| |  ||||||||||| |||||| || ||| ||||| |||||| ||||||| || |||||||||  || || ||||||||     
T  20726107 accgagtcatacggtttaatccgattcagtcatgcagttcaaccagtgagtcagtggttcgaccattaactcattgacccagtatccatgtcgagtcgat 20726008  T
Q  270 gaccgaaccgagttttaaaactatg 294  Q
    |||||| ||||||||||||||||||    
T  20726007 gaccgagccgagttttaaaactatg 20725983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 3355501 - 3355399
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | ||||||||||||  ||||| |||| ||||| |||||||||  ||| |||||||||| |||||| |||| |||||||||||    
T  3355501 gttcagtcatgcggttcgaccaatgactcagtgattcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgaattttaaaacta 3355402  T
Q  293 tgc 295  Q
    |||    
T  3355401 tgc 3355399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 295
Target Start/End: Original strand, 37034880 - 37034982
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | ||||||| |||| |||||| |||| ||||| | ||||||| ||| ||||||||||| || ||| ||||||||||||||||    
T  37034880 gttcagtcatgcggttcgaccaatgacccagtggttcgaccattgacccagtaacccagtacccatgccgagtcgatgatcgagccgagttttaaaacta 37034979  T
Q  293 tgc 295  Q
    |||    
T  37034980 tgc 37034982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 295
Target Start/End: Complemental strand, 50323464 - 50323329
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    ||||||||||||||||| |  ||||||||| | ||||  ||||||||||| | || ||||  | | |||||| || ||||||| |||||||||  || |     
T  50323464 gagtcatctaaccgagtcaaccggtttaatccggttctatcatgcggttcgaccagtgacctaatggttcgaccaataacccagtgacccagtatcctta 50323365  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    |||||||||| |||||||||||||||||||||||||    
T  50323364 ccgagtcgacaaccgaaccgagttttaaaactatgc 50323329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 24984170 - 24984245
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcga 268  Q
    ||||||||||||||||| | |||||||||| |||||||| |||| ||||| ||||||||| |||| ||||||||||    
T  24984170 gttcagtcatgcggttcgaccaatgactcactagttcgaccattgacccattgacccagtacccccgccgagtcga 24984245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 46545514 - 46545421
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtg 253  Q
    |||||||  ||||||||||| || |||||| | ||||||||||||||||||| |||||||||||| |||||| || | || || ||||||||||    
T  46545514 gagtcatacaaccgagttatccgatttaatacggttcagtcatgcggttcaaccaatgactcagtggttcgaccaatgactcattgacccagtg 46545421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 46535277 - 46535369
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| ||||        |||||||| |||| |||||||||| |||||| |||||||||||||||||    
T  46535277 ttcagtcatgcggttcgaccaatgactcagtggttcgaccatt--------gacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 46535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 19554184 - 19554297
Alignment:
Q  181 cggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccga 280  Q
    |||||||||||||||||||||| |||||| | |||||| ||||| ||||||||| | || || ||| |||||  ||   |||||||||  | ||| ||||    
T  19554184 cggtttaattcagttcagtcatacggttcgaccaatgattcagtggttcgatcaatgactcagtgatccagtaacctcaccgagtcgatcatcgagccga 19554283  T
Q  281 gttttaaaactatg 294  Q
    ||||||||||||||    
T  19554284 gttttaaaactatg 19554297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 45193206 - 45193302
Alignment:
Q  198 gtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||||||||| |  ||||| ||||| |||||| || | ||||| ||||||||  ||| ||||||||||| || ||| ||||||||||||||||||    
T  45193206 gtcatgcggttcgactaatgattcagtggttcgaccaatgacccagtgacccagcacccttgccgagtcgatgatcgagccgagttttaaaactatg 45193302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 41983793 - 41983875
Alignment:
Q  212 tcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||||| | |||||| ||||||| || |||| |||| ||| ||| |||| || |||||| ||||||||||||||||||    
T  41983793 tcaatgactcaatggttcgaccattaactcactgactcagtacccatgctgagttgatgaccgagccgagttttaaaactatg 41983875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 1846930 - 1846999
Alignment:
Q  226 gttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    |||||| |||||||||| | ||||||| || | |||||||||| || ||| |||||||||||||||||||    
T  1846930 gttcgaccattaacccattaacccagtacctccgccgagtcgatgatcgagccgagttttaaaactatgc 1846999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 20117850 - 20117947
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||||||||| |||| ||||| | |||||| |||| |||||||||| ||||  |||| |||||| || |||||| ||   |||||||||||||    
T  20117850 agtcatgcggttcaaccaataactcaatggttcgaccattgacccaatgactcagtatccctaccgagttgatgaccgagccagtttttaaaactatg 20117947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 31986096 - 31986189
Alignment:
Q  202 tgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    |||||||||| ||||||| |||| |||| | || | | ||| ||||||||  ||| | |||||||||||||||  |||||||||||||||||||    
T  31986096 tgcggttcaaccaatgacccagtggttcaaccaatgaaccagtgacccagcacccttaccgagtcgacgaccggtccgagttttaaaactatgc 31986189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 9293710 - 9293642
Alignment:
Q  226 gttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||| |||| ||||| ||||||||| |||| | |||||||| || ||| ||||||||||||||||||    
T  9293710 gttcgaccattgacccattgacccagtacccccgtcgagtcgatgatcgagccgagttttaaaactatg 9293642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 16914493 - 16914593
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    ||||||||||||||||||| | |||| |||| |||||| |||  ||||| ||||||| || | ||  |||||||| |  ||| |||||||||||||||||    
T  16914493 ttcagtcatgcggttcaattagtgacccagtggttcgaccatcgacccagtgacccaatgtctctatcgagtcgatggtcgagccgagttttaaaactat 16914592  T
Q  294 g 294  Q
    |    
T  16914593 g 16914593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 4225049 - 4225131
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaaccca 242  Q
    |||| |||||||||||| || ||  || || | ||||||| ||||||||||| |||||||||||| |||||| |||| |||||    
T  4225049 gagttatctaaccgagtcatccgagttgatccggttcagttatgcggttcaaccaatgactcagtggttcgaccattgaccca 4225131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 50358956 - 50359006
Alignment:
Q  181 cggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcga 231  Q
    |||||||||||| |||||||||||||||| | |||||| ||||| ||||||    
T  50358956 cggtttaattcaattcagtcatgcggttcgaccaatgattcagtggttcga 50359006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 45484280 - 45484231
Alignment:
Q  162 gtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaa 211  Q
    |||| ||||||||||||| ||||||||| |  ||||||||||||||||||    
T  45484280 gtcacctaaccgagttatccggtttaatccgattcagtcatgcggttcaa 45484231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 51727157 - 51727116
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatca 234  Q
    ||||||||||||||||||| |||||||||| | |||||||||    
T  51727157 gttcagtcatgcggttcaaccaatgactcaatggttcgatca 51727116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 16914594 - 16914690
Alignment:
Q  198 gtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||||||||| | ||||||||| ||| || |||  ||||||||||||| |||| || || |||| | | | ||  |||||||||||||||||    
T  16914594 gtcatgcggttcaattagtgactcagtggtttgaccatcgacccaatgacccaatgcctctaccaagtcaatggctgagtcgagttttaaaactatg 16914690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 79 - 295
Target Start/End: Original strand, 34191790 - 34192007
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaaa-cagagtcatctaaccgagtt 177  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||  ||||||||||||        ||||||||||| | | |||||||| |||||||    
T  34191790 ttttttgtttttaagtggccgagtcatcggttcaatccgatttaatctagttaaatacttataaaaaattaatcttaaaaccgggtcatctagccgagtt 34191889  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    ||  |||||||| |  || ||||||||||||||| |||||||||||| |||||| ||| |||||| ||| ||||| ||||||| |||||||  ||||| |    
T  34191890 atttggtttaatccgatttagtcatgcggttcaaccaatgactcagtggttcgaccatcaacccagtgatccagtacccctgcagagtcgatcaccgagc 34191989  T
Q  278 cgagttttaaaactatgc 295  Q
    ||||||||||||||||||    
T  34191990 cgagttttaaaactatgc 34192007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 46170775 - 46170641
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||||||||||||||||||| |||||| || | ||||| ||||||||||| | || ||||||||| |||||| ||||||||||||||||||||| |||||    
T  46170775 gagtcatctaaccgagttattcggtttgatccggttcattcatgcggttcgaccattgactcagtggttcgaccattaacccaatgacccagtgtccctg 46170676  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||| |||| |||||||||||||    
T  46170675 ccgagtcgatgaccgagccgaattttaaaactatg 46170641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 10992603 - 10992819
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||  || |||||||||||||| ||||||| ||||   ||||||||| |        ||||| |||| || | ||||| | ||||||||    
T  10992603 tttttagtttttaaatggccgagtcatcggttcgatccgatctaatctggttaaatacctataaaaatttaatattaacaccgggtcatatgaccgagtt 10992702  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    || ||||||||| |  ||||||||||| |||||| || ||||| ||| |||||| ||||||| || ||||||||| ||||||||||||||||| |||| |    
T  10992703 atccggtttaatccgattcagtcatgcagttcaaccagtgacttagtggttcgaccattaactcattgacccagtacccctgccgagtcgacggccgagc 10992802  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  10992803 cgagttttaaaactatg 10992819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 163 - 294
Target Start/End: Complemental strand, 31813619 - 31813488
Alignment:
Q  163 tcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccg 262  Q
    ||||||||||||||||| |||||||||||  |||| ||||||  ||||| || ||||||||| |||||| |||||||||| ||| ||||| |||||||||    
T  31813619 tcatctaaccgagttattcggtttaattcgattcaatcatgcaattcaaccactgactcagtggttcgaccattaacccattgaaccagtacccctgccg 31813520  T
Q  263 agtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||| ||||||  |||||||||||||||||    
T  31813519 agtcgatgaccgagtcgagttttaaaactatg 31813488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 34259161 - 34259377
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||  || |||||||||||||| ||||||| ||||   ||||||||| |        ||||| |||| || | ||||| | ||||||||    
T  34259161 tttttagtttttaaatggccgagtcatcggttcgatccgatctaatctggttaaatacctataaaaatttaatattaacactgggtcatatgaccgagtt 34259260  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    || || ||||||||  |||||||||||||||||| || ||||||||| |||||| ||||||| || ||||| | | ||| |||||||||||||||||| |    
T  34259261 atccgatttaattcgattcagtcatgcggttcaaccagtgactcagtggttcgaccattaactcattgacctaatacccatgccgagtcgacgaccgagc 34259360  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  34259361 cgagttttaaaactatg 34259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 29983335 - 29983234
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| ||||  ||||||||| ||||||||||||||||||||||||    
T  29983335 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccaccgagtcgatgaccgaaccgagttttaaaactat 29983236  T
Q  294 gc 295  Q
    ||    
T  29983235 gc 29983234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 11734245 - 11734345
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| |||||||||||||||||    
T  11734245 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 11734344  T
Q  294 g 294  Q
    |    
T  11734345 g 11734345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 1582255 - 1582154
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||||||||||||||||   |||||| |||| || || ||||||||||| ||||| ||||||| |||||| |||||||||||||||||    
T  1582255 ttcagtcatgcggttcaatcaatgactcaacggttcgaccattgactcattgacccagtgcacctgctgagtcgatgaccgagccgagttttaaaactat 1582156  T
Q  294 gc 295  Q
    ||    
T  1582155 gc 1582154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 10198441 - 10198308
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||| |||||||||||| || ||  || || | ||||||||||||||||| | |||||||||||| |||||| |||| ||||| ||| ||| | ||||||    
T  10198441 gagttatctaaccgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagtgatccaatacccctg 10198342  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    ||||||||| |||||| |||||||||||||||||    
T  10198341 ccgagtcgatgaccgagccgagttttaaaactat 10198308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 24096722 - 24096823
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    |||||| |||||||||| | |||||||||||| |||||| |||| | ||| ||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  24096722 gttcagacatgcggttcgaccaatgactcagtggttcgaccattgatccagtgacccagtacccctgccgaatcgatgaccgaaccgagttttaaaacta 24096821  T
Q  293 tg 294  Q
    ||    
T  24096822 tg 24096823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 36099691 - 36099792
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||| | |||||| |||||||||||||||||    
T  36099691 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactat 36099790  T
Q  294 gc 295  Q
    ||    
T  36099791 gc 36099792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 294
Target Start/End: Complemental strand, 17833797 - 17833666
Alignment:
Q  162 gtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgcc 261  Q
    ||||||| |||||||||| ||||||| |   |||||||||||||| |||| ||| |||||||| ||||||||||||||| ||||| ||||| |||||  |    
T  17833797 gtcatcttaccgagttatccggtttagtctggttcagtcatgcggctcaaccaacgactcagtggttcgatcattaacctaatga-ccagtacccctatc 17833699  T
Q  262 gagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||| ||||| ||||| |||||||||||||    
T  17833698 gagtcgatgaccgtaccgaattttaaaactatg 17833666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 36858233 - 36858133
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| |||||||||  ||| |||||||||| |||||| |||||||||||||||||    
T  36858233 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactat 36858134  T
Q  294 g 294  Q
    |    
T  36858133 g 36858133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 45269430 - 45269553
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| ||||||||| |  |||||| ||||||||| | |||||||||| | |||||| |||| ||||| ||||||||| || | |||||||||| |    
T  45269430 ccgagttatccggtttaatccgattcagttatgcggttcgaccaatgactcactggttcgaccattgacccagtgacccagtacctccgccgagtcgatg 45269529  T
Q  271 accgaaccgagttttaaaactatg 294  Q
    ||||| ||||||||||||||||||    
T  45269530 accgagccgagttttaaaactatg 45269553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 147 - 292
Target Start/End: Complemental strand, 5419041 - 5418899
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| |||| |||||  ||||||||||| ||||||||| |  |||||||    ||||||| || ||||||||| |||||| |||||||||| |     
T  5419041 ttaatcttaagacagggtcatacaaccgagttattcggtttaatccgattcagtc----ggttcaaccagtgactcagtggttcgaccattaacccatta 5418946  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||| || |||||||||||| |||||| ||||||||||||||||    
T  5418945 acccagtacctctgccgagtcgatgaccgagccgagttttaaaacta 5418899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 44605934 - 44606035
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||||| |||| | |||| ||||| ||||||||| |||| |||||||||| |||||| |||| |||||||||||    
T  44605934 gttcagtcatgcggttcgaccaatgactcagtggttcaaccattgacccattgacccagtaccccggccgagtcgatgaccgagccgaattttaaaacta 44606033  T
Q  293 tg 294  Q
    ||    
T  44606034 tg 44606035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 33610798 - 33610645
Alignment:
Q  87 ttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaaaca-gagtcatctaaccgagttatacggtt 185  Q
    ||||||| ||||| |||||||||| |||| |||||||| | ||||| |||||        ||||||||||| | ||||||||||||||||||||  ||||    
T  33610798 ttttaagtggtcgggtcatcggtttaatctgatttaatcgggttaattacttataaaaatttaatcttaaaaacgagtcatctaaccgagttatttggtt 33610699  T
Q  186 taattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaac 239  Q
    ||||    |||||||||||||||||| |||||||||||| |||||| |||||||    
T  33610698 taatctgattcagtcatgcggttcaaccaatgactcagtggttcgaccattaac 33610645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 16216974 - 16217109
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||| |||||||||||| || ||  || || | ||||||||||| ||||| | |||||||||||| |||||| |||| ||||| ||||||| | ||| ||    
T  16216974 gagttatctaaccgagtcatccgagttgatccggttcagtcatgtggttcgaccaatgactcagtggttcgaccattgacccagtgacccaatacccatg 16217073  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    | ||||||| |||||| |||||||||||||||||||    
T  16217074 ctgagtcgatgaccgagccgagttttaaaactatgc 16217109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 9822642 - 9822519
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| ||||||||| | ||||||| ||||||||| | |||||||||| | |||||| |||| || || ||||||| | |||| ||||| |||| |    
T  9822642 ccgagttatccggtttaatccggttcagttatgcggttcgaccaatgactcactggttcgaccattgactcagtgacccaatacccccgccgaatcgatg 9822543  T
Q  271 accgaaccgagttttaaaactatg 294  Q
    | ||| ||||||||||||||||||    
T  9822542 atcgagccgagttttaaaactatg 9822519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 10724567 - 10724444
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| ||||||||| | ||||||| ||||||||| | |||||||||| | |||||| |||| || || ||||||| | |||| ||||| |||| |    
T  10724567 ccgagttatccggtttaatccggttcagttatgcggttcgaccaatgactcactggttcgaccattgactcagtgacccaatacccccgccgaatcgatg 10724468  T
Q  271 accgaaccgagttttaaaactatg 294  Q
    | ||| ||||||||||||||||||    
T  10724467 atcgagccgagttttaaaactatg 10724444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 14801973 - 14802063
Alignment:
Q  204 cggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||| | |||||||||| | |||||| |||| ||||| ||||| ||| |||| |||||||||| |||||| ||||||||||||||||||    
T  14801973 cggttcgaccaatgactcaatggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 14802063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 15248965 - 15249055
Alignment:
Q  204 cggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||| | |||||||||| | |||||| |||| ||||| ||||| ||| |||| |||||||||| |||||| ||||||||||||||||||    
T  15248965 cggttcgaccaatgactcaatggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 15249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 25069432 - 25069361
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcga 231  Q
    |||||||  ||||||||||| || |||||| | ||||||||||||||||||| |||||||||||| ||||||    
T  25069432 gagtcatacaaccgagttatccgatttaatacggttcagtcatgcggttcaaccaatgactcagtggttcga 25069361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 296
Target Start/End: Original strand, 16198683 - 16198813
Alignment:
Q  165 atctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgag 264  Q
    |||||||||||| || || ||| || |  ||||| |||||||||||| || |||| |||| |||||| |||  ||||| ||||||| | || || |||||    
T  16198683 atctaaccgagtcatccgatttgatccgtttcagccatgcggttcaaccagtgacccagtggttcga-catcgacccagtgacccaatacctctaccgag 16198781  T
Q  265 tcgacgaccgaaccgagttttaaaactatgca 296  Q
    |||| | |||| ||||||||||||||||||||    
T  16198782 tcgatggccgagccgagttttaaaactatgca 16198813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 33628265 - 33628360
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||| | ||||||| || | |||| | |||| ||||| |||| |||| ||||||||||||| | | |||| ||||||||||||||||    
T  33628265 agtcatgcggttcgaccaatgacccaatggttcaaccattgacccagtgactcagtacccctgccgagtcaatgtccgagccgagttttaaaacta 33628360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 47423545 - 47423452
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| ||||||        ||| ||||||||| |||| ||||| ||||  ||||| |||||||||||||||||    
T  47423545 ttcagtcatgcggttcgaccaatgactcagtggttcga--------ccattgacccagtacccccgccgaatcgataaccgagccgagttttaaaactat 47423454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 46004153 - 46004278
Alignment:
Q  168 taaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcg 267  Q
    |||||||||||| ||||||||| | |||||||||||| |||||| ||||||  |||| |||  | || | ||||| |||||||||   | | |||||||     
T  46004153 taaccgagttat-cggtttaatccggttcagtcatgcagttcaaccaatgatccagtggttgaaccagtgacccagtgacccagtcatcttcccgagtca 46004251  T
Q  268 acgaccgaaccgagttttaaaactatg 294  Q
    ||||| || |||| |||||||||||||    
T  46004252 acgactgatccgatttttaaaactatg 46004278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 45498951 - 45498883
Alignment:
Q  173 gagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaaccca 242  Q
    ||||||| ||||||||| | |||||||||| |||||| |||||||||||| | |||||| |||| |||||    
T  45498951 gagttatccggtttaat-cggttcagtcattcggttcgatcaatgactcaatggttcgaccattgaccca 45498883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 296
Target Start/End: Original strand, 19916387 - 19916536
Alignment:
Q  147 ttaatcttaaacagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatga 246  Q
    |||||| ||| | |||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| || ||||| |||||| |||||| |||||||    
T  19916387 ttaatcctaagccgagtcatctaaccgagttattcagtttaattcagttcagtcatgcggttcaaccaacgattcagtggttcgaccattaatccaatga 19916486  T
Q  247 cccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgca 296  Q
    |||||| || |||| | ||||| |||||| ||||||||||||||||||||    
T  19916487 cccagtacctctgctgtgtcgatgaccgagccgagttttaaaactatgca 19916536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 147 - 295
Target Start/End: Complemental strand, 4414563 - 4414414
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || ||||||| ||| |||||||| ||||||||| |  ||||||||||||||||||  | ||||||||| |||||| |||| ||||| ||    
T  4414563 ttaatcttaagaccgagtcatttaatcgagttatccggtttaatccgattcagtcatgcggttcaacaagtgactcagtggttcgaccattgacccagtg 4414464  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  4414463 acccagtacccctgccgagtcgatgaccgagccgagttttaaaactatgc 4414414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 8132925 - 8132791
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||||| ||| ||||||||| ||||||||| | ||||||||||||||||||| |||||||||||| |||| | ||||||| || ||||||||| || ||     
T  8132925 gagtcaactagccgagttatccggtttaatccggttcagtcatgcggttcaaccaatgactcagtggttcaaccattaactcagtgacccagtacctcta 8132826  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||| ||||||||||||||||||    
T  8132825 ccgagtcgatgaccgagccgagttttaaaactatg 8132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 295
Target Start/End: Original strand, 25232673 - 25232775
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  25232673 gttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccctgccgagtcgatgaccgagccgagttttaaaacta 25232772  T
Q  293 tgc 295  Q
    |||    
T  25232773 tgc 25232775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 85 - 294
Target Start/End: Complemental strand, 54822257 - 54822047
Alignment:
Q  85 gtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagttatacgg 183  Q
    |||||||||  |||||||||||| ||||||  ||||||||  ||||||||||||        |||| ||||| || ||||  |||| ||||||||| ||     
T  54822257 gtttttaagttgtcgagtcatcgattcaatatgatttaatatagttaaatacttatacaaatttaaccttaagaccgagtgttctacccgagttatccga 54822158  T
Q  184 tttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagtt 283  Q
    ||||||    |||||||||||||||||| || ||||||||| ||||||||||| || || ||||||||| | ||||||||||||| |||||| |||||||    
T  54822157 tttaatctgtttcagtcatgcggttcaaccagtgactcagtggttcgatcattgactcagtgacccagtacacctgccgagtcgatgaccgagccgagtt 54822058  T
Q  284 ttaaaactatg 294  Q
    |||||||||||    
T  54822057 ttaaaactatg 54822047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 6354939 - 6355073
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||||||||||||| ||||| ||||||||| | |||||||||||||||||||  | ||||||| | |||||| |||||||||| |||| |||  || ||     
T  6354939 gagtcatctaaccgggttattcggtttaatccggttcagtcatgcggttcaactattgactcaatggttcgaccattaacccagtgactcagaacctcta 6355038  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
     |||||||| |||||| ||||||||||||||||||    
T  6355039 tcgagtcgatgaccgagccgagttttaaaactatg 6355073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 1936509 - 1936610
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| ||||||||||||||| ||||||  || ||||||||||||    
T  1936509 gttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccctgccgagtcgatgaccgagtcgggttttaaaacta 1936608  T
Q  293 tg 294  Q
    ||    
T  1936609 tg 1936610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 23611540 - 23611640
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| | |||||||  ||| |||||||||| ||||||||||||||||||||||||    
T  23611540 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattaacccagtatccccgccgagtcgatgaccgaaccgagttttaaaactat 23611639  T
Q  294 g 294  Q
    |    
T  23611640 g 23611640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 11792484 - 11792384
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||| ||||| |||||| |||| ||||| |||||||||  ||| |||||||||| |||||| |||||||||||||||||    
T  11792484 ttcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactat 11792385  T
Q  294 g 294  Q
    |    
T  11792384 g 11792384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 28359678 - 28359778
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||||||||||||  || | ||||||||||| ||||| ||||||| | || |||||||||| | |||||| |||||||||||||||||    
T  28359678 ttcagtcatgcggttcaatcaatgatccaatggttcgatcattgacccagtgacccaatacctctgccgagtcaatgaccgagccgagttttaaaactat 28359777  T
Q  294 g 294  Q
    |    
T  28359778 g 28359778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 12704625 - 12704759
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||| |||||||||||| || ||  || || | ||||||| ||||||||| |||||||||||||| |||||| |||| ||  | ||||||||| ||| ||    
T  12704625 gagttatctaaccgagtcatccgagttgatccggttcagtaatgcggttcgatcaatgactcagtggttcgaccattgacttagtgacccagtacccatg 12704724  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    || |||||| |||||| ||||||||||||||||||    
T  12704725 cctagtcgatgaccgagccgagttttaaaactatg 12704759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 55675554 - 55675420
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||| |||||||||||  || ||  ||||| | ||| |||| |||||||| | ||||||||||||  ||||| |||| ||| | ||||||||| ||||||    
T  55675554 gagttatctaaccgagccattcgagttaatccggtttagtcttgcggttcgaccaatgactcagtgattcgaccattgacctattgacccagtacccctg 55675455  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
     |||||||| |||||| ||||||||||||||||||    
T  55675454 tcgagtcgatgaccgagccgagttttaaaactatg 55675420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 295
Target Start/End: Complemental strand, 7362251 - 7362120
Alignment:
Q  163 tcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccg 262  Q
    |||||||| |||||||| |||||||||  |||||| ||||||||||||| |||||| | ||| |||||| ||||||  || ||| ||| | ||  || ||    
T  7362251 tcatctaatcgagttattcggtttaatctagttcaatcatgcggttcaaccaatgatttagtggttcgaccattaa-tcagtgatccaatacctttgtcg 7362153  T
Q  263 agtcgacgaccgaaccgagttttaaaactatgc 295  Q
    |||||| ||||||||| ||||||||||||||||    
T  7362152 agtcgatgaccgaaccaagttttaaaactatgc 7362120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 44352187 - 44352087
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||||| || |||| || | |||||| |||  || || ||||||||| ||  ||||||||||| ||||||||||||||||||||||||    
T  44352187 ttcagtcatgcggttcaaccagtgacccaatggttcgaccatcgactcagtgacccagtacctatgccgagtcgatgaccgaaccgagttttaaaactat 44352088  T
Q  294 g 294  Q
    |    
T  44352087 g 44352087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 26203658 - 26203780
Alignment:
Q  172 cgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacga 271  Q
    ||||| || ||||||||| |  ||||||||||| |||||| |||||||||  | |||||| |||  || || |||||||||||| ||| |||||||| ||    
T  26203658 cgagtcatccggtttaatccgattcagtcatgcagttcaaccaatgactcgatggttcgaccatccactcagtgacccagtgcctctgtcgagtcgatga 26203757  T
Q  272 ccgaaccgagttttaaaactatg 294  Q
     ||| ||||||||||||||||||    
T  26203758 tcgagccgagttttaaaactatg 26203780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 24394196 - 24394073
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| || ||||||   ||||||| ||| | ||| | |||| ||||| | |||||| |||| ||||| ||||||||| |||| |||||||||| |    
T  24394196 ccgagttatccgatttaatctggttcagttatgtgattcgaccaataactcactggttcgaccattgacccagtgacccagtacccccgccgagtcgatg 24394097  T
Q  271 accgaaccgagttttaaaactatg 294  Q
    ||||| ||||||||||||| ||||    
T  24394096 accgagccgagttttaaaattatg 24394073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 296
Target Start/End: Original strand, 24776140 - 24776271
Alignment:
Q  165 atctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgag 264  Q
    |||||||||||| || || ||| || |  ||||| ||||| |||||| ||||||  |||| |||||| |||  ||||| ||||||| | || || |||||    
T  24776140 atctaaccgagtcatccgatttgatccgattcagccatgcagttcaaccaatgatccagtggttcgaccatcgacccagtgacccaatacctctaccgag 24776239  T
Q  265 tcgacgaccgaaccgagttttaaaactatgca 296  Q
    |||| | |||| ||||||||||||||||||||    
T  24776240 tcgatggccgagccgagttttaaaactatgca 24776271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 25510579 - 25510485
Alignment:
Q  202 tgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgca 296  Q
    |||||||||| ||||||| |||| |||| | || | | ||| ||||||||  ||| | |||||||||||||||  ||||||||||||||||||||    
T  25510579 tgcggttcaaccaatgacccagtggttcaaccaatgaaccagtgacccagcacccttaccgagtcgacgaccggtccgagttttaaaactatgca 25510485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 43245685 - 43245819
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    ||||||| | ||||||||||  | ||| || | ||||||| ||||||||||| || | ||||| | |||||| |||||||||| ||||||| | ||||||    
T  43245685 gagtcatatgaccgagttatttgatttgatccggttcagttatgcggttcaaccagtaactcaatggttcgaccattaacccagtgacccaatacccctg 43245784  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
     ||||||||   ||||  ||| |||||||||||||    
T  43245785 tcgagtcgatagccgagtcgaattttaaaactatg 43245819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 13428758 - 13428847
Alignment:
Q  170 accgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    ||||||||||  | ||| |||| ||||||| |||||||||||| | ||||||||| |||||| ||||||||||  ||| |||| ||||||    
T  13428758 accgagttatttgttttgattcggttcagttatgcggttcaattagtgactcagtggttcgaccattaacccagcgacgcagtacccctg 13428847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 55497553 - 55497505
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaaccca 242  Q
    |||||||||||||||| |||||||||||||| |||||| |||| |||||    
T  55497553 ttcagtcatgcggttcgatcaatgactcagtggttcgaccattgaccca 55497505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 8132513 - 8132471
Alignment:
Q  82 ttagtttttaaggggtcgagtcatcggttcaatccgatttaat 124  Q
    |||||||||||| || ||| |||||||||||||||||||||||    
T  8132513 ttagtttttaagtggccgaatcatcggttcaatccgatttaat 8132471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 38519384 - 38519331
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgaccca 250  Q
    ||||||||||||||| || ||||||| | |||||| |||||||||| |||||||    
T  38519384 agtcatgcggttcaaccagtgactcaatggttcgaccattaacccagtgaccca 38519331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 295
Target Start/End: Original strand, 32493072 - 32493289
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||| || |||||||| ||||||||||||||||||  ||||||||||          |||||| ||| || |||| | || ||| ||||    
T  32493072 tttttagtttttaagtggccgagtcatgggttcaatccgatttaatctagttaaatacacataaaaatttaatcgtaagaccgagtgaacttaccaagtt 32493171  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    || ||||||||||| ||||||||||||||||||| ||||||  |||| |||||| ||||||| || ||||||| | ||| ||||||||||| |||||| |    
T  32493172 attcggtttaattcggttcagtcatgcggttcaaccaatgatccagtggttcgaccattaactcactgacccaatacccatgccgagtcgatgaccgagc 32493271  T
Q  278 cgagttttaaaactatgc 295  Q
    ||||||||||||||||||    
T  32493272 cgagttttaaaactatgc 32493289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 36834005 - 36833903
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| |||||||| ||||| |||||| |||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  36834005 gttcagtcatgcggttcgatcaatgattcagtggttcgaccattgacccaatgacccagtacccctgccgagtcgatgaccgagccgagttttaaaacta 36833906  T
Q  293 tgc 295  Q
    |||    
T  36833905 tgc 36833903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 28761636 - 28761775
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || |||||| ||||||||||||| ||||||||| |  |||||||||||||||||| || ||||||||| |||||| |||| |||||||     
T  28761636 ttaatcttaagaccgagtcacctaaccgagttatccggtttaatccgattcagtcatgcggttcaaccagtgactcagtggttcgaccattgacccaata 28761735  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagtttt 285  Q
    ||||||| ||||||||||||||| |||||| |||| ||||    
T  28761736 acccagtacccctgccgagtcgatgaccgagccgaatttt 28761775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 42063563 - 42063461
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| ||||||||||||||||    
T  42063563 gttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaacta 42063464  T
Q  293 tgc 295  Q
    |||    
T  42063463 tgc 42063461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 294
Target Start/End: Complemental strand, 597350 - 597234
Alignment:
Q  177 tatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaa 276  Q
    ||||||||||||| | ||||||||| ||||||||| |||||||||||| |||||| ||||||| |||||| ||||||||||| ||||||||| ||| ||     
T  597350 tatacggtttaatccggttcagtcacgcggttcaa-caatgactcagtggttcgaccattaactcaatgatccagtgcccctaccgagtcgatgactgag 597252  T
Q  277 ccgagttttaaaactatg 294  Q
    |||| |||||||||||||    
T  597251 ccgaattttaaaactatg 597234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 19726716 - 19726816
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| |||||||||||||||||    
T  19726716 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 19726815  T
Q  294 g 294  Q
    |    
T  19726816 g 19726816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 40485556 - 40485656
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||| | |||||| |||||||||||||||||    
T  40485556 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactat 40485655  T
Q  294 g 294  Q
    |    
T  40485656 g 40485656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 41726361 - 41726461
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  41726361 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactat 41726460  T
Q  294 g 294  Q
    |    
T  41726461 g 41726461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 295
Target Start/End: Complemental strand, 14910192 - 14910094
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    ||||||||||||| | |||||||||||| ||||||||||| ||||| ||| ||||| | || |||||||||| |||||| |||||||||||||||||||    
T  14910192 agtcatgcggttcgaccaatgactcagtggttcgatcattgacccattgatccagtactcccgccgagtcgatgaccgagccgagttttaaaactatgc 14910094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 30360555 - 30360455
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| || | ||||| |||| |||||| |||||||||||||||||    
T  30360555 ttcagtcatgcggttcgaacaatgactcagtggttcgaccattgacccattgacccagtacctccgccgaatcgatgaccgagccgagttttaaaactat 30360456  T
Q  294 g 294  Q
    |    
T  30360455 g 30360455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 8014901 - 8015025
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| ||||||||| |  |||||| ||||||||| | |||||||||| | |||||| |||| | ||| ||||| ||| |||| |||||||| | |    
T  8014901 ccgagttatccggtttaatccgattcagttatgcggttcgaccaatgactcactggttcgaccattgatccagtgacctagtacccccgccgagtcaatg 8015000  T
Q  271 accgaaccgagttttaaaactatgc 295  Q
    ||||| |||||||||||||||||||    
T  8015001 accgagccgagttttaaaactatgc 8015025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 31008538 - 31008638
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||| ||||||||||| | |||||||||| | |||||| |||| ||||| |||| |||| |||| |||||||||| ||||||||||| ||||||||||||    
T  31008538 ttcaatcatgcggttcgaccaatgactcactggttcgaccattgacccattgactcagtacccccgccgagtcgatgaccgaaccgaattttaaaactat 31008637  T
Q  294 g 294  Q
    |    
T  31008638 g 31008638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 18656601 - 18656727
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||| |||||||||||| || ||  || || | ||||||||||||||||| | |||||||||||| |||||| ||||        |||||||| ||||||    
T  18656601 gagttatctaaccgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccatt--------gacccagtacccctg 18656692  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||| ||||||||||||||||||    
T  18656693 ccgagtcgatgaccgagccgagttttaaaactatg 18656727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 293
Target Start/End: Original strand, 44056504 - 44056604
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    |||||||||| |||||| | |||||||||||| |||||| |||| ||||| |||  |||| ||||||||||||||| || ||| | ||||||||||||||    
T  44056504 gttcagtcatacggttcgaccaatgactcagtggttcgaccattgacccagtgattcagtacccctgccgagtcgatgatcgagctgagttttaaaacta 44056603  T
Q  293 t 293  Q
    |    
T  44056604 t 44056604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 3655954 - 3655857
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||||||| | |||||||||||| |||||| |||| | ||| ||| |||||  ||| |||||||||| |||||| |||| |||||||||||||    
T  3655954 agtcatgcggttcgaccaatgactcagtggttcgaccattgatccattgatccagtatccccgccgagtcgatgaccgagccgaattttaaaactatg 3655857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 38712110 - 38712167
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatac 136  Q
    ||||||||||||||| || |||||||||||||||||||||||||||  ||||||||||    
T  38712110 tttttagtttttaagtggccgagtcatcggttcaatccgatttaatctagttaaatac 38712167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 13487153 - 13487252
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| | ||| ||| ||||| |||| ||||| |||| |||||| |||| ||||||||||||    
T  13487153 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgatccattgatccagtacccc-gccgattcgatgaccgagccgaattttaaaactat 13487251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 4455357 - 4455450
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||| | |||||||||||| ||||||        ||| ||||||||| ||||||||||||||| | |||| || |||||||||||||    
T  4455357 gttcagtcatgcggttcgaccaatgactcagtggttcga--------ccagtgacccagtacccctgccgagtcgatggccgagccaagttttaaaacta 4455448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 36658607 - 36658514
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| ||||        |||||||| ||||  ||||||||| |||||| |||||||||||||||||    
T  36658607 ttcagtcatgcggttcgaccaatgactcagtggttcgaccatt--------gacccagtacccccaccgagtcgatgaccgagccgagttttaaaactat 36658516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 26403637 - 26403727
Alignment:
Q  204 cggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||||| || ||||||||| |||| | ||||||| ||||||| |||| |||||  |||||||| |||| | ||||||||||||| ||||    
T  26403637 cggttcaaccagtgactcagtggttcaaccattaactcaatgacacagtacccctatcgagtcgatgaccaagccgagttttaaaattatg 26403727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 20821798 - 20821899
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||| |||||||||||    ||||||||| |||||| |||||||||| |||| ||||  || ||||||||||| | || | || |||||||||||||    
T  20821798 gttcagttatgcggttcaacaggtgactcagtggttcgaccattaacccagtgactcagtatccttgccgagtcgatggccaagccaagttttaaaacta 20821897  T
Q  293 tg 294  Q
    ||    
T  20821898 tg 20821899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 39375248 - 39375122
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||| |||||||||||| || ||  || || | ||||||||||||||||| | |||||||||||| ||||||        ||| ||||||||| ||||||    
T  39375248 gagttatctaaccgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcga--------ccattgacccagtacccctg 39375157  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
     |||||||| |||| |  |||||||||||||||||    
T  39375156 tcgagtcgatgaccaagacgagttttaaaactatg 39375122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 29867852 - 29867770
Alignment:
Q  170 accgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagt 252  Q
    ||||||| || || |||||| | ||||||||||||||||||| || ||||||| | |||| | || | |||||||||||||||    
T  29867852 accgagtcatccgatttaatccggttcagtcatgcggttcaaccagtgactcactggttcaaccaatgacccaatgacccagt 29867770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 11031143 - 11031030
Alignment:
Q  181 cggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccga 280  Q
    ||||||||| | ||||  ||||||||||||| ||||||| |    |||||| |||| ||||| |||||||||  |||  |||||| || |||||  ||||    
T  11031143 cggtttaatccggttctatcatgcggttcaaccaatgacccgacggttcgaccattgacccagtgacccagtatccccaccgagttgatgaccggtccga 11031044  T
Q  281 gttttaaaactatg 294  Q
    ||||||||||||||    
T  11031043 gttttaaaactatg 11031030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 31893208 - 31893309
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||||| || ||||||||| ||| || |  | || || |||||||||  || | ||||||||||||||   |||| |||||||||||    
T  31893208 gttcagtcatgcggttcaaccagtgactcagtggtttgaccgatgactcattgacccagtaaccttaccgagtcgacgaccagtccgatttttaaaacta 31893307  T
Q  293 tg 294  Q
    ||    
T  31893308 tg 31893309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 5970006 - 5970054
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaaccca 242  Q
    |||||||||||||||||| |||||||||| | |||||| |||| |||||    
T  5970006 ttcagtcatgcggttcaaccaatgactcaatggttcgaccattgaccca 5970054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 294
Target Start/End: Original strand, 6065401 - 6065614
Alignment:
Q  82 ttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaaa-cagagtcatctaaccgagttata 180  Q
    |||||||||||| || |||||||||||||||||||||||||||    |||||||| |        ||| ||||||  |  ||||||| |||||||||||     
T  6065401 ttagtttttaagtggccgagtcatcggttcaatccgatttaatctgattaaatacctataaaaaattattcttaaggccaagtcatcaaaccgagttatt 6065500  T
Q  181 cggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccga 280  Q
    |||||||||    |||||||||||||||||| ||||||| |||| |||||| |||||||||| |||| |||| |||||||||| |||| ||||| |||||    
T  6065501 cggtttaatctgattcagtcatgcggttcaaccaatgacccagtggttcgaccattaacccagtgactcagtacccctgccgaatcgatgaccggaccga 6065600  T
Q  281 gttttaaaactatg 294  Q
    ||||||||||||||    
T  6065601 gttttaaaactatg 6065614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 16106684 - 16106819
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    ||||||||||||||||||||  |||||||| |  |||||||||||||||||| || ||||||||| |||||| |||||||||| ||||||| | | | ||    
T  16106684 gagtcatctaaccgagttatctggtttaatccgattcagtcatgcggttcaaccagtgactcagtggttcgaccattaacccagtgacccaatactcttg 16106783  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    ||||||||| |||||| |||||||||||||||||||    
T  16106784 ccgagtcgatgaccgagccgagttttaaaactatgc 16106819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 35305265 - 35305399
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||| |||||||||||| || ||  || || | ||||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| ||||||    
T  35305265 gagttatctaaccgagtcatccgagttgatccggttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagtgacccagtacccctg 35305364  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||| ||||||||||||||||||    
T  35305365 ccgagtcgatgaccgagccgagttttaaaactatg 35305399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 37484537 - 37484403
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    ||||||||||||||||| || ||||||||| ||||||  ||||||||||| | || ||||||| | ||||||||| |||||||||||||||||  || |     
T  37484537 gagtcatctaaccgagtcatccggtttaatccagttccatcatgcggttcgaccagtgactcaatggttcgatcaataacccaatgacccagtatcctta 37484438  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||||||| ||||| ||||||||||||||||||    
T  37484437 ccgagtcgacaaccgagccgagttttaaaactatg 37484403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 32878694 - 32878818
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| |||||||||||  |||||| ||||||||| | |||||||||| | |||||| |||| |||||  |||||||| |||| ||||||||||||    
T  32878694 ccgagttatccggtttaattcgattcagttatgcggttcgaccaatgactcattggttcgaccattgacccagggacccagtacccccgccgagtcgacg 32878793  T
Q  271 accgaaccgagttttaaaactatgc 295  Q
    ||||| |||||||||||||||||||    
T  32878794 accgagccgagttttaaaactatgc 32878818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 10810536 - 10810662
Alignment:
Q  169 aaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcga 268  Q
    ||||||||||| |||||||||    |||||||||||||||||| | ||||| |||| ||||||||||||||||| ||||||||| ||  |||||||||||    
T  10810536 aaccgagttattcggtttaatctgattcagtcatgcggttcaaccgatgacccagtggttcgatcattaacccattgacccagtaccgttgccgagtcga 10810635  T
Q  269 cgaccgaaccgagttttaaaactatgc 295  Q
     || ||| |||||||||||||||||||    
T  10810636 tgatcgagccgagttttaaaactatgc 10810662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 19882062 - 19881933
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| ||||||||| | ||||||| ||||||||| | |||||||||| | |||||| |||| ||| | ||||||||| |||| |||||||| | |    
T  19882062 ccgagttatccggtttaatccggttcagttatgcggttcgaccaatgactcactggttcgaccattgaccaagtgacccagtacccccgccgagtcaatg 19881963  T
Q  271 accgaaccgagttttaaaactatgcaaata 300  Q
    ||||| |||||||||||||||||| |||||    
T  19881962 accgagccgagttttaaaactatggaaata 19881933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 294
Target Start/End: Original strand, 21800638 - 21800786
Alignment:
Q  147 ttaatcttaa-acagagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatg 245  Q
    |||||||||| || ||||||| |||||||||||| || |||||| |  ||||||||||| |||||| || |||| ||||  ||||| |||| ||||| ||    
T  21800638 ttaatcttaagaccgagtcatttaaccgagttatccgatttaatccgattcagtcatgcagttcaaccagtgacccagtgattcgaccattgacccagtg 21800737  T
Q  246 acccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||| || ||||| ||||||||| |||||| ||||||||||||||||||    
T  21800738 acccggtacccctaccgagtcgatgaccgagccgagttttaaaactatg 21800786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 24128853 - 24128753
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||| ||||| |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| |||||||||||||||||    
T  24128853 ttcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 24128754  T
Q  294 g 294  Q
    |    
T  24128753 g 24128753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 295
Target Start/End: Complemental strand, 17513117 - 17513019
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatgc 295  Q
    |||||||| |||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| |||||||||||||||||||    
T  17513117 agtcatgcagttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatgc 17513019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 3988806 - 3988705
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||||| ||||||| || |  ||||| |||| |||||||||||||||  |||||||||||| | |||||| ||||||||||||||||    
T  3988806 gttcagtcatgcggttcaaccaatgacccaatgattcgaccattgacccaatgacccagtatccctgccgagtcaatgaccgagccgagttttaaaacta 3988707  T
Q  293 tg 294  Q
    ||    
T  3988706 tg 3988705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 23293189 - 23293289
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||  |||||||| | |||||| |||||||||||||||||    
T  23293189 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattcacccattgacccagtaccctcgccgagtcaatgaccgagccgagttttaaaactat 23293288  T
Q  294 g 294  Q
    |    
T  23293289 g 23293289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 7153536 - 7153437
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||||| | | ||||||||| |||| | |||||||| |||||| |||||||||||||||||    
T  7153536 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattaatc-attgacccagtacccccgtcgagtcgatgaccgagccgagttttaaaactat 7153438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 39678404 - 39678304
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | ||||||||||||  ||||| |||| || || ||||||||| || |||||||||||| ||| ||| ||| ||||||||||||    
T  39678404 ttcagtcatgcggttcgaccaatgactcagtgattcgaccattgactcattgacccagtacctctgccgagtcgatgacagaatcgaattttaaaactat 39678305  T
Q  294 g 294  Q
    |    
T  39678304 g 39678304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 296
Target Start/End: Original strand, 16457739 - 16457853
Alignment:
Q  182 ggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgag 281  Q
    ||||||||||  |||||| ||||| ||||| || ||| ||||| |||| | ||||||| || ||||||| | ||| |||||| |||| |||||| |||||    
T  16457739 ggtttaattcgattcagttatgcgattcaaccagtgattcagtggttccaccattaactcattgacccaatacccatgccgaatcgatgaccgagccgag 16457838  T
Q  282 ttttaaaactatgca 296  Q
    |||||||||||||||    
T  16457839 ttttaaaactatgca 16457853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 12365535 - 12365636
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||||| || |||| |||| |||||| || ||| ||| ||||||||| |||   |||| ||||||||||  ||||||||||||||||    
T  12365535 gttcagtcatgcggttcaaccagtgacccagtggttcgaccaataaaccagtgacccagtaccctaaccgaatcgacgaccggtccgagttttaaaacta 12365634  T
Q  293 tg 294  Q
    ||    
T  12365635 tg 12365636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 296
Target Start/End: Complemental strand, 23251092 - 23250967
Alignment:
Q  171 ccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacg 270  Q
    ||||||||| ||||||||| |  |||||| ||||||||| | |||||||||  | |||||| |||| | ||| ||||||||| |||| | |||||||| |    
T  23251092 ccgagttatccggtttaatccgattcagttatgcggttcgaccaatgactcgctggttcgaccattgatccagtgacccagtacccccgtcgagtcgatg 23250993  T
Q  271 accgaaccgagttttaaaactatgca 296  Q
    || || | ||||||||||||||||||    
T  23250992 actgagctgagttttaaaactatgca 23250967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 29523894 - 29523987
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| ||||        |||||||| |||| |||||||||| |||||| |||||||||||||||||    
T  29523894 ttcagtcatgcggttcgaccaatgactcagtggttcgaccatt--------gacccagtacccccgccgagtcgatgaccgagccgagttttaaaactat 29523985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 37255988 - 37256088
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||| ||||||||||||| ||| |||||| | |||||| |||| | ||| ||| |||||||| || ||||||||| ||||||||||  ||||||||||||    
T  37255988 ttcaatcatgcggttcaaccaacgactcaatggttcgaccattgaaccattgatccagtgcctctaccgagtcgatgaccgaaccggtttttaaaactat 37256087  T
Q  294 g 294  Q
    |    
T  37256088 g 37256088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 24934963 - 24934837
Alignment:
Q  169 aaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcga 268  Q
    ||||||||||| || |||||| ||||||||| ||||||||||| ||||||  |||| |||| | || |||| || || |||||||    |||||||||||    
T  24934963 aaccgagttatccgatttaatacagttcagttatgcggttcaaccaatgatccagtggttcaaccaataactcagtggcccagtgatattgccgagtcga 24934864  T
Q  269 cgaccgaaccgagttttaaaactatgc 295  Q
     || |||  ||||||||||||||||||    
T  24934863 tgatcgattcgagttttaaaactatgc 24934837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 25683655 - 25683529
Alignment:
Q  169 aaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcga 268  Q
    ||||||||||| || |||||| ||||||||| ||||||||||| ||||||  |||| |||| | || |||| || || |||||||    |||||||||||    
T  25683655 aaccgagttatccgatttaatacagttcagttatgcggttcaaccaatgatccagtggttcaaccaataactcagtggcccagtgatattgccgagtcga 25683556  T
Q  269 cgaccgaaccgagttttaaaactatgc 295  Q
     || |||  ||||||||||||||||||    
T  25683555 tgatcgattcgagttttaaaactatgc 25683529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 18540735 - 18540658
Alignment:
Q  217 gactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||||| |||||| || | ||||||||| ||||| ||||| ||||||||| || ||| ||||||||||||||||||    
T  18540735 gactcagtggttcgaccagtgacccaatgatccagtaccccttccgagtcgatgatcgagccgagttttaaaactatg 18540658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 26606663 - 26606583
Alignment:
Q  162 gtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaaccca 242  Q
    |||||||||||||||||| ||||||||||   ||||||||||| |||||| || | ||||||| |||||| | ||||||||    
T  26606663 gtcatctaaccgagttattcggtttaatttgattcagtcatgcagttcaaccattaactcagtggttcgaccgttaaccca 26606583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 37314945 - 37315037
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| ||||        |||||||| |||| ||||| |||| |||||| |||||||||||||||||    
T  37314945 ttcagtcatgcggttcgaccaatgactcagtggttcgaccatt--------gacccagtacccccgccgaatcgatgaccgagccgagttttaaaactat 37315036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 299
Target Start/End: Original strand, 22315193 - 22315299
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||| ||||| ||||||| || ||||| ||| |||||| |||| || |  ||||| ||| | ||||||||||| | ||||||  |||||||||||||||    
T  22315193 gttcaatcatgtggttcaaccagtgactgagtggttcgaccattgactcggtgacctagtacacctgccgagtcaatgaccgagacgagttttaaaacta 22315292  T
Q  293 tgcaaat 299  Q
    |||||||    
T  22315293 tgcaaat 22315299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 27905722 - 27905622
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    ||||||||| |||||||| | ||||| |||| |||||| |||  ||||| ||||||| |||| || ||||||||| | || | ||| |||||||||||||    
T  27905722 ttcagtcatacggttcaaccgatgacccagtggttcgaccatctacccagtgacccaatgcctctaccgagtcgatggccaagccgtgttttaaaactat 27905623  T
Q  294 g 294  Q
    |    
T  27905622 g 27905622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 39061932 - 39062024
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| ||||||        ||| ||||||| | |||| |||||||||| |||||| |||| ||||||||||||    
T  39061932 ttcagtcatgcggttcgaccaatgactcagtggttcga--------ccattgacccaatacccccgccgagtcgatgaccgagccgaattttaaaactat 39062023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 31900505 - 31900414
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| ||||||        ||| ||||||||| |||| ||||| |||| |||||| |||| ||||||||||||    
T  31900505 ttcagtcatgcggttcgaccaatgactcagtggttcga--------ccattgacccagtacccccgccgaatcgatgaccgagccgaattttaaaactat 31900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 29781453 - 29781416
Alignment:
Q  257 ctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  29781453 ctgccgagtcgaagaccgagccgagttttaaaactatg 29781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 7940 - 7838
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||| |||| ||  ||||||||||| |||||| ||||||||||||||||    
T  7940 gttcagtcatgcggttcaaccaacgactcagtggttcgaccattaacccaatgactcagtacctttgccgagtcgatgaccgagccgagttttaaaacta 7841  T
Q  293 tgc 295  Q
    |||    
T  7840 tgc 7838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 11039 - 11136
Alignment:
Q  197 agtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||||| |||||| ||||||||||||||||||    
T  11039 agtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 11136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 12821 - 12721
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||||||| |||| |||||||||| ||||||  ||||||||||||||||    
T  12821 ttcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagtcgagttttaaaactat 12722  T
Q  294 g 294  Q
    |    
T  12721 g 12721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 17854 - 17955
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||||| |||||||||| | |||||| ||||||||||||||| |||| ||||||||||||  | |  ||| | ||||||||||||||    
T  17854 gttcagtcatgcggttcaaccaatgactcaatggttcgaccattaacccaatgactcagtacccctgccgagtgaatggtcgagctgagttttaaaacta 17953  T
Q  293 tg 294  Q
    ||    
T  17954 tg 17955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 52010 - 51909
Alignment:
Q  193 gttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaacta 292  Q
    ||||||||||||||||  | ||||||||| || |||||| |||| || || ||||||||| |||| |||||||||| |||||| ||||||||||||||||    
T  52010 gttcagtcatgcggtttgaccaatgactctgtggttcgaccattgactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaacta 51911  T
Q  293 tg 294  Q
    ||    
T  51910 tg 51909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 4815 - 5030
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||| ||  |||||||| |||||||||||||||||   ||||||||| |        |||||||||| || |  ||||||||| |||||    
T  4815 tttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtt 4914  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    ||  ||||||||    |||||||| |||| || | ||  |||||||| |||||| |||||||| | |||||||    |||| ||||||||| |||||| |    
T  4915 atttggtttaatctgattcagtcaagcggctcgaccagcgactcagtggttcgaccattaaccgagtgaccca-acaccctaccgagtcgatgaccgagc 5013  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  5014 cgagttttaaaactatg 5030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 4835 - 5050
Alignment:
Q  79 tttttagtttttaaggggtcgagtcatcggttcaatccgatttaatggagttaaatacttnnnnnnngttaatcttaa-acagagtcatctaaccgagtt 177  Q
    ||||||||||||||| ||  |||||||| |||||||||||||||||   ||||||||| |        |||||||||| || |  ||||||||| |||||    
T  4835 tttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtt 4934  T
Q  178 atacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaac 277  Q
    ||  ||||||||    |||||||| |||| || | ||  |||||||| |||||| |||||||| | |||||||    |||| ||||||||| |||||| |    
T  4935 atttggtttaatctgattcagtcaagcggctcgaccagcgactcagtggttcgaccattaaccgagtgaccca-acaccctaccgagtcgatgaccgagc 5033  T
Q  278 cgagttttaaaactatg 294  Q
    |||||||||||||||||    
T  5034 cgagttttaaaactatg 5050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 7842 - 7976
Alignment:
Q  160 gagtcatctaaccgagttatacggtttaattcagttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctg 259  Q
    |||||||  ||||||||||| || |||||| | ||||||||||||| ||||| |||||||||||| |||||| || | || || ||||||||||          
T  7842 gagtcatacaaccgagttatccgatttaatacggttcagtcatgcgattcaaccaatgactcagtggttcgaccaatgactcattgacccagtgatatga 7941  T
Q  260 ccgagtcgacgaccgaaccgagttttaaaactatg 294  Q
    ||||||||| |||||  |||| |||||||||||||    
T  7942 ccgagtcgatgaccggtccgatttttaaaactatg 7976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 64445 - 64345
Alignment:
Q  194 ttcagtcatgcggttcaatcaatgactcagtagttcgatcattaacccaatgacccagtgcccctgccgagtcgacgaccgaaccgagttttaaaactat 293  Q
    |||||||||||||||||| || |||| || | |||||| |||  || || ||||||||| ||  || |||||||| |||||| |||||||||||||||||    
T  64445 ttcagtcatgcggttcaaccagtgacccaatggttcgaccatcgactcagtgacccagtacctatgtcgagtcgatgaccgagccgagttttaaaactat 64346  T
Q  294 g 294  Q
    |    
T  64345 g 64345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University