View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_19 (Length: 413)
Name: NF17758_high_19
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 37727855 - 37728236
Alignment:
| Q |
11 |
caaaggcatatgatgcacatgaacccccaacccaaaagaaagaaaatcgattatgcaatgcttaacttcctacttcatacaacacttgtcatatatatgg |
110 |
Q |
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| T |
37727855 |
caaaggcatatgatgcacatgaacccccaacccaaaagaaagaaaatcgattatgcaatgcttaacttcctacttcatacaacacttgtcatatatatgg |
37727954 |
T |
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| Q |
111 |
atatacataatgcttaatcttttggatggcctttgggaagatagataatgcatcagacattgaacgattatagggattgtgtcatttacaataccatttt |
210 |
Q |
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| T |
37727955 |
atatacataatgcttaatcttttggatggcctttgggaagatagataatgcatcagacattgaacgattattgggattgtgtcatttacaataccatttt |
37728054 |
T |
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| Q |
211 |
ggctttcatgatctcctcggaatcggatggaaggatcttgtgaccatctaatagcttaatctatttatctttgagaagatgatcaaatatctagtcaact |
310 |
Q |
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| T |
37728055 |
ggctttcatgatctcctcggaatcggatggaaggatcttgtgaccatctaatagcttaatctatttatctttgagaagatgatcaaatatctagtcaact |
37728154 |
T |
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| Q |
311 |
tttgttatgtcagaggcatactcagtgtgaccacatgtagcttttcccttttagaattttagttgtttgtatatctaatgtt |
392 |
Q |
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| T |
37728155 |
tttgttatgtcagaggcatactcagtgtgaccacatgtagcttttcccttttagaattttagttgtttgtatatctaatgtt |
37728236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 17910774 - 17910693
Alignment:
| Q |
249 |
tgtgaccatctaatagcttaatctatttatctttgagaagatgatcaaatatctagtcaacttttgttatgtcagaggcata |
330 |
Q |
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| T |
17910774 |
tgtgaccatctaacaacttaatcttcttatctttgagcagatgatcaaatatctggccagcttttgttacatcaaaggcata |
17910693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 23286804 - 23286717
Alignment:
| Q |
250 |
gtgaccatctaatagcttaatctatttatctttgagaagatgatcaaatatctagtcaacttttgttatgtcagaggcatactcagtg |
337 |
Q |
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| T |
23286804 |
gtgagcatctaatagccaaatatgcttatctttgagcatatgatcaaatatttggccaactttcgttgtgtcaaaggcatactcagtg |
23286717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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