View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17758_high_22 (Length: 372)
Name: NF17758_high_22
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 29838901 - 29838559
Alignment:
| Q |
11 |
caaaggaatgaagaaggttatttagattaaacaatacaaaaatgggacaatccagatatgtacaaacctgagttctgcaggtagctgtggaagaacatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838901 |
caaaggaatgaagaaggttatttagattaaacaatacaaaaatgggacaatccagatatgtacaaacctgagttctgcaggtagctgtggaagaacatgt |
29838802 |
T |
|
| Q |
111 |
ttgactgcgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtctgctttctatcagtcgataccaaaagattaaatttcacatta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29838801 |
ttgactgcgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtctgctttctattagtcgataccaaaagattaaatttcacatta |
29838702 |
T |
|
| Q |
211 |
tcggattgtggcaaaatggaacnnnnnnnnnngaaagaatatattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcatt |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838701 |
tcggattgtggcaaaatggaacaaaaaaa----aaagaatatattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcatt |
29838606 |
T |
|
| Q |
311 |
aaatgtacatgcacgcatgcacgatcacagaagcacacagaagaaac |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838605 |
aaatgtacatgcacgcatgcacgatcacagaagcacacagaagaaac |
29838559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 34627445 - 34627526
Alignment:
| Q |
75 |
aacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaa |
156 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| |||| || || || ||||| ||| |||||||||||||||||||| |
|
|
| T |
34627445 |
aacctgagctcagcaggcaactgtggaagaacatgcctgacagcacagtcaagatacccaccagcctttaagaagatatcaa |
34627526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University