View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17758_high_23 (Length: 367)
Name: NF17758_high_23
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_23 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 154771 - 155137
Alignment:
| Q |
1 |
atcaagtctcataattttcttcgtggcgatatacttgcttggaattgtgacatacggtgttgccattccctctggactcttcattcccgtcatacttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
154771 |
atcaagtctcataattttcttcgtggcgatatacttgcttggaattgtgacatacggtgttgccattccctctggactcttcattcccgtcatacttgct |
154870 |
T |
|
| Q |
101 |
ggagcttcttacgggcgtcttatagggactgtgatggctccattcacagctcttgatacgggtttgtttgctctccttggagccgcatctttccttggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
154871 |
ggagcttcttacgggcgtcttatagggactgtgatggctccattcacagctcttgatacgggtttgtttgctctccttggagccgcatctttccttggtg |
154970 |
T |
|
| Q |
201 |
gcacgatgagaatgacagtttctctatgtgtcatacttcttgaactcactaataacttgttgatgctaccattggtcatgttggttctcctcatttctaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
154971 |
gcacgatgagaatgacagtttctctatgtgtcatacttcttgaactcactaataacttgttgatgctaccattggtcatgttggttctcctcatttctaa |
155070 |
T |
|
| Q |
301 |
gacagtggctgattgttttaacaaaggtgtttatgatcagattgtggcgttgaagggactaccttat |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155071 |
gacagtggctgattgttttaacaaaggtgtttatgatcagattgtggcgttgaagggactaccttat |
155137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 160 - 339
Target Start/End: Complemental strand, 56469624 - 56469445
Alignment:
| Q |
160 |
gggtttgtttgctctccttggagccgcatctttccttggtggcacgatgagaatgacagtttctctatgtgtcatacttcttgaactcactaataacttg |
259 |
Q |
| |
|
|||||||||||| || | || || ||||| |||||||||||||| ||||||||||| || ||| | |||||||| ||||| ||||| ||||| ||| | |
|
|
| T |
56469624 |
gggtttgtttgcacttttgggtgctgcatccttccttggtggcacaatgagaatgactgtctctttgtgtgtcattcttctcgaacttactaacaacctc |
56469525 |
T |
|
| Q |
260 |
ttgatgctaccattggtcatgttggttctcctcatttctaagacagtggctgattgttttaacaaaggtgtttatgatca |
339 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| || ||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
56469524 |
ctcatgctaccattggtcatgttagttctcctcatctcaaagtctgtggcagattgttttaacaaaggtgtttatgatca |
56469445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University