View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_24 (Length: 358)
Name: NF17758_high_24
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 38829266 - 38828912
Alignment:
| Q |
1 |
tcctaatctttttcaagaattatccgtggtttctctttcgtcgctccacaaacaaaagagtcttgatataatggggccctcttgctccgatcgatcgata |
100 |
Q |
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| T |
38829266 |
tcctaatctttttcaagaattatccgtggtttctctttcttctctccacaaacaaaagagtcttgatataatggggccctcttgctccgatcgatcgata |
38829167 |
T |
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| Q |
101 |
aaagatgatggcacccttcaattgaactacaaacatggttctttcgataagaaaacactgatgagtcggtatctttcttttggagcacaaggcctgaaca |
200 |
Q |
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| T |
38829166 |
aaagatgatggcgcccttcaattgaactacaaacatggttctttcgataagaaaacactgatgagtcggtatctttcttttggagcacaaggcctgaaca |
38829067 |
T |
|
| Q |
201 |
tggaagattcaaatagctgtgaatcaaatgggagttataagtgtttcagttctttagttgtttaaccactttaaccaaattacttggttatgtcatcgac |
300 |
Q |
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| T |
38829066 |
tggaagattcaaatagctgtgaatcaaatgggagttataagtgtttcagttctttagttgtttaaccactttaaccaaattacttggttatgtcatcggc |
38828967 |
T |
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| Q |
301 |
tcggtaagaaaatgataataatatattattgtaatgacaattttgcaaatgtttc |
355 |
Q |
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| T |
38828966 |
tcggtaagaaaatgataataatatattattgtaatgacaattttgcaaatgtttc |
38828912 |
T |
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