View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_28 (Length: 345)
Name: NF17758_high_28
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 46 - 328
Target Start/End: Original strand, 43385144 - 43385431
Alignment:
| Q |
46 |
tattgtatagtatagatatagtgaaaacataataggtgatcggaaacacttgaacacgcatctgtttattttttcatttcttatctatccaatgatttcg |
145 |
Q |
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| T |
43385144 |
tattgtatagtatagatagagtgaaaacataataggtgatcggaaacacttggacacgtatctgtttattttttcatttcttatctatccaatgatttcg |
43385243 |
T |
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| Q |
146 |
atcatacgaagaattactttaagcttatgtttggaaacgtg-----aattgcaaccggtcccaaagaaaagatgtagttatagctgcttcgacattacca |
240 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
43385244 |
atcatacgaagaattactttaagcctgtgtttggaaacgtgcttgaaattgcaaccggttccaaagaaaagatgtagttatagctgcttcgacgttacca |
43385343 |
T |
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| Q |
241 |
agtggctgtggtttgatccaatccaaccagaaccaaccaacaaactaaattgattgcaatttcattctgatcagtcaacacccgtcgt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43385344 |
agtggctgtggtttgatccaatccaaccagaaccaaccaacaaactaaattggttgcaatttcattctgatcagtcaacacccgtcgt |
43385431 |
T |
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