View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17758_high_31 (Length: 313)
Name: NF17758_high_31
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 18925093 - 18925393
Alignment:
| Q |
1 |
ccttccgtcgctaatggccctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttg |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
18925093 |
ccttccgtcgctaatagccctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttg |
18925192 |
T |
|
| Q |
101 |
gaaacaatgtcacccttctcaaagactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaag |
200 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18925193 |
gaaccaatgtcacccttctcaatgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaac |
18925292 |
T |
|
| Q |
201 |
tgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18925293 |
tgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctc |
18925392 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
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|
| T |
18925393 |
t |
18925393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 4667671 - 4667385
Alignment:
| Q |
15 |
tggccctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacc |
114 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||| |||| ||| | ||| |
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| T |
4667671 |
tggccctgtttttcttcgcctccatttttacccaacatcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttacc |
4667572 |
T |
|
| Q |
115 |
cttctcaaagactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaata |
214 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||| ||||| || ||| || | | |||| | | ||||| || | |
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| T |
4667571 |
cttctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaactagacg |
4667472 |
T |
|
| Q |
215 |
taactttcattccaaacaccataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctct |
301 |
Q |
| |
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||||||||||||| || | || ||| |||| ||| |||| |||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
4667471 |
taactttcattcccaaaaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgccgtcttttctct |
4667385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 4631671 - 4631371
Alignment:
| Q |
13 |
aatggccctatttttcttcgccttcatttttacccaacatcgtat------caaaactttgaaacctataacgccctcttcaccgtcgtagttggaaaca |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| ||| || ||||||||| |||||||||||||| ||| ||| |||| || |
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| T |
4631671 |
aatggccctatttttcttcgcctctatttttatccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaacca |
4631572 |
T |
|
| Q |
107 |
atgtcacccttctcaaagactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaa |
206 |
Q |
| |
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| | |||||||||||||||||||| ||| | |||||| || |||||||| |||||||||||| ||||| || ||| | |||| |||| |||||| |
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| T |
4631571 |
accttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaa |
4631472 |
T |
|
| Q |
207 |
gttaaatataactttcattcc---aaacac---cataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctc |
300 |
Q |
| |
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| |||| |||||||||||||| ||| || || ||| |||| ||| | || ||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
4631471 |
gctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttcttttctc |
4631372 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
4631371 |
t |
4631371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 301
Target Start/End: Original strand, 4711607 - 4711723
Alignment:
| Q |
188 |
aaatgaaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtc |
284 |
Q |
| |
|
|||| ||||||| ||||||| ||| ||||||||||||||||||| ||||||||| ||||| | |||||||||||| |||||||| || || ||||| |
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| T |
4711607 |
aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc |
4711706 |
T |
|
| Q |
285 |
catgccttcttttctct |
301 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
4711707 |
tatgccttcttttctct |
4711723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 4783202 - 4783255
Alignment:
| Q |
20 |
ctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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|
| T |
4783202 |
ctatttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct |
4783255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 4815631 - 4815684
Alignment:
| Q |
20 |
ctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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| T |
4815631 |
ctatttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct |
4815684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 4696730 - 4696841
Alignment:
| Q |
193 |
aaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtccatgc |
289 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| | || |||||| || ||||| | |||||||||||| |||||||| || | ||||| |||| |
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|
| T |
4696730 |
aaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgc |
4696829 |
T |
|
| Q |
290 |
cttcttttctct |
301 |
Q |
| |
|
|||||||||||| |
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|
| T |
4696830 |
cttcttttctct |
4696841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 4663421 - 4663369
Alignment:
| Q |
17 |
gccctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
69 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
4663421 |
gccctgtttttcttcgccttcatttttactcaacatcttataaaaactttgaa |
4663369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 301
Target Start/End: Complemental strand, 4637417 - 4637301
Alignment:
| Q |
188 |
aaatgaaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtc |
284 |
Q |
| |
|
|||| ||||||| ||| |||||||| |||||||||||||| |||| |||||| |||||||| | ||||||||| || ||||| || || | ||||| |
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|
| T |
4637417 |
aaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgtc |
4637318 |
T |
|
| Q |
285 |
catgccttcttttctct |
301 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4637317 |
aatgccttcttttctct |
4637301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 4637579 - 4637533
Alignment:
| Q |
23 |
tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
69 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4637579 |
tttttcttcgtcttcatttttaccctacatcttatcaaaactttgaa |
4637533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 4864650 - 4864604
Alignment:
| Q |
23 |
tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
69 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4864650 |
tttttgttcgtcttcatttttacccaacatcttatcaaaactttgaa |
4864604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 4644425 - 4644374
Alignment:
| Q |
18 |
ccctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
69 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||||||||| |||||| |
|
|
| T |
4644425 |
ccctgtttttcttcgcctttatttttaccctgcatcgtatcaaaattttgaa |
4644374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 4696543 - 4696594
Alignment:
| Q |
18 |
ccctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
69 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || ||||| | |||||||||| |
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|
| T |
4696543 |
ccctgtttttcttcgccttcatttttacccgacttcgtaccgaaactttgaa |
4696594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 4673250 - 4673147
Alignment:
| Q |
201 |
tgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggct---tatgctttcatcaacggaattgagatcgtgtccatgccttctttt |
297 |
Q |
| |
|
||||||| |||| |||| ||||||||||| || ||| || ||||||| | | ||||||||||| |||||||| || || ||||| |||||||||||| |
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|
| T |
4673250 |
tgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaacggaatcgaaattgtgtcaatgccttctttt |
4673151 |
T |
|
| Q |
298 |
ctct |
301 |
Q |
| |
|
|||| |
|
|
| T |
4673150 |
ctct |
4673147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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