View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_32 (Length: 306)
Name: NF17758_high_32
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 18925115 - 18924846
Alignment:
| Q |
19 |
atagggccattagcgacggaaggaaatgagaatgtgaagttggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggt |
118 |
Q |
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| T |
18925115 |
atagggctattagcgacggaaggaaatgagaatgtgaagttggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggt |
18925016 |
T |
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| Q |
119 |
tgggtttggatttgatagatgaaaattcagtctgtggttcaatgatagagaatagtttggagtcatcaatgtcaccaacccaggttcgattttcaaatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
18925015 |
tgggtttggatttgatagatgaaaattcagtctgtggttcaatgatagagaatagtttggtgtcatccatgtcaccaacccaggttcgattttcaaatgt |
18924916 |
T |
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| Q |
219 |
tgtatctatggagtggccacaattcagggctaaattatcataagagtgaaccactagagggaacaatagt |
288 |
Q |
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| T |
18924915 |
tgtatctatggagtggccacaattcagggctaaattatcataagagttaaccactagagggaacaatagt |
18924846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 4631661 - 4631902
Alignment:
| Q |
19 |
atagggccattagcgacggaaggaaatgagaatgtgaagttggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggt |
118 |
Q |
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||||||||||| | || ||||| ||| ||||||||||| || ||||| ||||||||||| ||||| || |||||| | ||||||| |||||||||||| | |
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| T |
4631661 |
atagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggat |
4631760 |
T |
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| Q |
119 |
tgggtttggatttgatagatgaaaattcagtctgtggttcaatgatagagaatagtttggagtcatcaatgtcaccaacccaggttcgattttcaaatgt |
218 |
Q |
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| T |
4631761 |
tagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagat |
4631860 |
T |
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| Q |
219 |
tgtatctatggagtggccacaattcagggctaaattatcata |
260 |
Q |
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| T |
4631861 |
agtatcgttgaagtggccacaattcactgctaaaatatcata |
4631902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 4667686 - 4667880
Alignment:
| Q |
42 |
aaatgagaatgtgaagttggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggttgggtttggatttgatagatgaa |
141 |
Q |
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||||||||||||||| | ||||||||| |||||||| |||| ||| ||||| || |||||||||||||||||||| || | ||||| ||| | |||| | |
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| T |
4667686 |
aaatgagaatgtgaaatcggaaaatgatatacgtgcagaggaaaatggaatatgattaacagaatcagagttaggattagctttggcttttacagat-at |
4667784 |
T |
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| Q |
142 |
aattcagtctgtggttcaatgatagagaatagtttggagtcatcaatgtcaccaacccaggttcgattttcaaatgttgtatctatggagtggccacaat |
241 |
Q |
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||| ||||||||||||| |||||| ||||||| |||||| |||| ||||||||||||||||||||||| | ||||||||||| || ||||||| |
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| T |
4667785 |
gatt-----tgtggttcaatgacagagaagagtttggtatcatcattgtccccaacccaggttcgattttcaaagatagtatctatggaatgaccacaat |
4667879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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