View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_44 (Length: 260)
Name: NF17758_high_44
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 42314291 - 42314434
Alignment:
| Q |
108 |
gtataagtatttctcgctcaatttaaaatttctaaacataactttgattgaaagggatttatgtataattattggtcttttttggattgttagggaacta |
207 |
Q |
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| T |
42314291 |
gtataagtatttctcgctcaatttaaaatttctaaacataattttgattgaaagggagttatgtataattattggtcttttttggattgttagggaacta |
42314390 |
T |
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| Q |
208 |
gtctttcatctaaggacttgccaacacacaaattctatcctttg |
251 |
Q |
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| T |
42314391 |
gtctttcatctaaggacttgccaacacacaaattctatcctttg |
42314434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 42314105 - 42314200
Alignment:
| Q |
16 |
acgtggcaccttggttattcacggttgctgctagcacaattgatagagacttcgccagttatgttacactaggtgataacaagcactttaaggtat |
111 |
Q |
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| T |
42314105 |
acgtggcaccttggttattcacggttgctgctagcacaattgatagagacttcgccagttatgttacactaggtgataacaagcactttaaggtat |
42314200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 42734943 - 42734989
Alignment:
| Q |
34 |
tcacggttgctgctagcacaattgatagagacttcgccagttatgtt |
80 |
Q |
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| T |
42734943 |
tcacagttgctgcaagcacaattgatagagacttcacaagttatgtt |
42734989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 24267072 - 24267121
Alignment:
| Q |
18 |
gtggcaccttggttattcacggttgctgctagcacaattgatagagactt |
67 |
Q |
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| T |
24267072 |
gtggcgccttggttgttcagtgttgctgctagcacaattgatagaaactt |
24267121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 31050947 - 31050903
Alignment:
| Q |
24 |
ccttggttattcacggttgctgctagcacaattgatagagacttc |
68 |
Q |
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| T |
31050947 |
ccttgggtgttcactgttgctgctagtacaattgatagagacttc |
31050903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 31063412 - 31063368
Alignment:
| Q |
24 |
ccttggttattcacggttgctgctagcacaattgatagagacttc |
68 |
Q |
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| T |
31063412 |
ccttgggtattcacagttgctgctagtacaattgacagagacttc |
31063368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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