View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17758_high_45 (Length: 255)

Name: NF17758_high_45
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17758_high_45
NF17758_high_45
[»] chr5 (21 HSPs)
chr5 (39-255)||(40744549-40744765)
chr5 (128-255)||(40744796-40744922)
chr5 (128-253)||(22497190-22497315)
chr5 (128-228)||(22497489-22497589)
chr5 (128-222)||(13861173-13861267)
chr5 (128-253)||(22499204-22499331)
chr5 (161-228)||(36914052-36914119)
chr5 (129-232)||(42858739-42858841)
chr5 (128-184)||(22554116-22554172)
chr5 (128-251)||(31289802-31289925)
chr5 (165-219)||(11562962-11563016)
chr5 (128-198)||(22510029-22510099)
chr5 (162-219)||(11502499-11502556)
chr5 (162-219)||(11509895-11509952)
chr5 (162-219)||(11517268-11517325)
chr5 (162-219)||(11524670-11524727)
chr5 (162-219)||(11532081-11532138)
chr5 (162-214)||(11539553-11539605)
chr5 (161-253)||(42859071-42859163)
chr5 (168-255)||(20405238-20405324)
chr5 (168-255)||(34992118-34992204)
[»] chr3 (15 HSPs)
chr3 (129-253)||(13662098-13662223)
chr3 (128-252)||(13662411-13662535)
chr3 (128-253)||(13661738-13661860)
chr3 (129-253)||(31721414-31721538)
chr3 (128-253)||(12012281-12012405)
chr3 (128-234)||(12012598-12012703)
chr3 (166-253)||(32981534-32981621)
chr3 (142-230)||(32981193-32981281)
chr3 (173-252)||(496121-496200)
chr3 (154-252)||(32981653-32981750)
chr3 (174-253)||(495994-496073)
chr3 (168-255)||(4333939-4334025)
chr3 (202-253)||(13661651-13661702)
chr3 (168-255)||(21631188-21631274)
chr3 (128-255)||(42371262-42371388)
[»] chr7 (12 HSPs)
chr7 (134-253)||(29530538-29530657)
chr7 (129-253)||(42588045-42588169)
chr7 (168-255)||(7668098-7668185)
chr7 (169-252)||(44602674-44602757)
chr7 (130-208)||(44602468-44602546)
chr7 (186-255)||(29237342-29237411)
chr7 (169-228)||(44602910-44602969)
chr7 (168-255)||(46736493-46736580)
chr7 (163-221)||(15444968-15445027)
chr7 (168-255)||(46369816-46369902)
chr7 (171-245)||(12308016-12308090)
chr7 (204-253)||(42586328-42586377)
[»] chr4 (15 HSPs)
chr4 (137-255)||(2491681-2491799)
chr4 (131-252)||(27529986-27530107)
chr4 (161-253)||(11983997-11984089)
chr4 (171-253)||(11983721-11983803)
chr4 (162-253)||(44468977-44469068)
chr4 (171-253)||(50908575-50908657)
chr4 (168-253)||(14203956-14204041)
chr4 (150-222)||(45332535-45332607)
chr4 (143-253)||(9604058-9604167)
chr4 (171-253)||(11130749-11130831)
chr4 (171-253)||(50908762-50908844)
chr4 (139-216)||(567113-567190)
chr4 (161-218)||(11983903-11983960)
chr4 (168-255)||(37082458-37082544)
chr4 (141-176)||(45341741-45341776)
[»] chr8 (3 HSPs)
chr8 (134-253)||(32095022-32095141)
chr8 (128-253)||(32094818-32094944)
chr8 (150-253)||(21598712-21598813)
[»] chr2 (3 HSPs)
chr2 (162-253)||(38858141-38858231)
chr2 (128-255)||(347700-347827)
chr2 (139-219)||(23212653-23212733)
[»] chr6 (1 HSPs)
chr6 (155-252)||(12275034-12275131)
[»] chr1 (16 HSPs)
chr1 (140-253)||(29700027-29700140)
chr1 (164-249)||(46997650-46997735)
chr1 (139-218)||(17190388-17190467)
chr1 (128-235)||(29700258-29700365)
chr1 (173-252)||(34903194-34903273)
chr1 (129-211)||(29700594-29700676)
chr1 (129-222)||(11331985-11332078)
chr1 (129-222)||(11490006-11490099)
chr1 (128-255)||(7731176-7731300)
chr1 (168-255)||(37392489-37392575)
chr1 (134-253)||(39313491-39313610)
chr1 (168-255)||(41770988-41771074)
chr1 (171-253)||(43762952-43763034)
chr1 (163-253)||(48217774-48217864)
chr1 (162-249)||(18208549-18208637)
chr1 (168-216)||(29699814-29699862)
[»] scaffold0712 (1 HSPs)
scaffold0712 (139-179)||(1269-1309)
[»] scaffold0709 (1 HSPs)
scaffold0709 (139-179)||(1289-1329)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 39 - 255
Target Start/End: Complemental strand, 40744765 - 40744549
Alignment:
Q  39 ctttcgaacaagatatattgttagtatgtgttagtagatgcgacaatattaatatttaaaaaacaaataaatgagttccatggttatcccttgtgatgag 138  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40744765 ctttcgaacaagatatattgttagtatgcgttagtagatgcgacaatattaatatttaaaaaaaaaataaatgagttccatggttatcccttgtgatgag 40744666  T
Q  139 cattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40744665 cattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaa 40744566  T
Q  239 gattatgaaattttggt 255  Q
    |||||||||||||||||    
T  40744565 gattatgaaattttggt 40744549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 40744922 - 40744796
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    |||||||| | |||||||||| |||| |||||  ||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||| ||||    
T  40744922 cttgtgattaacattatccgtaattattttttttaaaaa-aaataaattaaattttgtaaaatgaccattatgcacataaaattaaggaaatcatgagtt 40744824  T
Q  228 taaataagaaagattatgaaattttggt 255  Q
    | |||||||||| |||| ||||||||||    
T  40744823 ttaataagaaagcttataaaattttggt 40744796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 22497190 - 22497315
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    ||||||||||||||||||||| ||||||||||   ||||||||||||||||| |||| ||| |||| |||||| |||||||||||| |||||||| ||||    
T  22497190 cttgtgatgagcattatccgtaattaattttttttaaaacaaataaattaaattttgcaaattgaccattatgcacataaaattaaagagatcatgagtt 22497289  T
Q  228 taaataagaaagattatgaaattttg 253  Q
    | |||||| |  ||||| ||||||||    
T  22497290 ttaataaggacaattataaaattttg 22497315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 22497489 - 22497589
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||||| |||| |||| ||||| || |||||| ||||||||||||||||||||| ||||    
T  22497489 cttgtgatgagcattatccgtaattaatttttttaaaaataaataaaataaaatttgcaaaataaccattatgcacataaaattaaggagatcatgagtt 22497588  T
Q  228 t 228  Q
    |    
T  22497589 t 22497589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 13861173 - 13861267
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcat 222  Q
    |||||||||| |||||||||| ||||||||||  |||||||||||||||||| |||   | ||||| |||||| |||||||||||||||||||||    
T  13861173 cttgtgatgaccattatccgtaattaatttttttaaaaacaaataaattaaattttactatatgaccattatgcacataaaattaaggagatcat 13861267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 22499204 - 22499331
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaa--aaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataag 225  Q
    |||||||||| |||||||| | ||||||||||     ||||||||||||||||| |||  |||| |||  ||||| |||||||||||||| | |||||||    
T  22499204 cttgtgatgaacattatccataattaattttttttttaaaacaaataaattaaaattttcaaaacgacagttatgcacataaaattaaggcggtcataag 22499303  T
Q  226 tttaaataagaaagattatgaaattttg 253  Q
    ||| |||||| | |||||||||||||||    
T  22499304 ttttaataaggatgattatgaaattttg 22499331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 36914052 - 36914119
Alignment:
Q  161 aaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagttt 228  Q
    ||||||||| ||||||||| |||| |||||||| |||||| ||||||||||||||||||||| |||||    
T  36914052 aaaaaacaattaaattaaattttgcaaaatgaccattatgcacataaaattaaggagatcatgagttt 36914119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 42858841 - 42858739
Alignment:
Q  129 ttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagttt 228  Q
    ||||||||| |||||||||| |||| |||| | ||||||||||||||||||  |||||||||||| |||||| ||   |||||||||||||| ||||||     
T  42858841 ttgtgatgaccattatccgtaattagtttt-ctaaaaacaaataaattaaatattgtaaaatgaccattatgcacgagaaattaaggagatcgtaagttg 42858743  T
Q  229 aaat 232  Q
    ||||    
T  42858742 aaat 42858739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 22554172 - 22554116
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttg 184  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||    
T  22554172 cttgtgatgagcattatccataattaattttttaaaaaacaaataaattaaattttg 22554116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 31289925 - 31289802
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    ||||||||||  ||||||||  ||||  |||| | ||| |||||| || ||| |||| |||||||| |||||| ||||||||||||||||||| | ||||    
T  31289925 cttgtgatgacaattatccgaaattatgtttttagaaatcaaatagataaaattttgcaaaatgaccattatgcacataaaattaaggagatcttgagtt 31289826  T
Q  228 taaataagaaagattatgaaattt 251  Q
    | |||||| | |||||| ||||||    
T  31289825 ttaataaggacgattataaaattt 31289802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 11562962 - 11563016
Alignment:
Q  165 aacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagat 219  Q
    ||||| ||||||||| |||| ||||||||||||||| ||||||||||||| ||||    
T  11562962 aacaattaaattaaattttgcaaaatgactattatgcacataaaattaagaagat 11563016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 22510029 - 22510099
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactatta 198  Q
    |||||||||||||||||| || ||||||||||  ||||| |||||||||||| |||  |||||||| ||||    
T  22510029 cttgtgatgagcattatcagtaattaatttttttaaaaagaaataaattaaaattttcaaaatgacaatta 22510099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 11502499 - 11502556
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagat 219  Q
    |||||||| ||||||||| |||| ||||||||||||||| ||||| ||||||| ||||    
T  11502499 aaaaacaattaaattaaattttgcaaaatgactattatgcacatataattaagaagat 11502556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 11509895 - 11509952
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagat 219  Q
    |||||||| ||||||||| |||| ||||||||||||||| ||||| ||||||| ||||    
T  11509895 aaaaacaattaaattaaattttgcaaaatgactattatgcacatataattaagaagat 11509952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 11517268 - 11517325
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagat 219  Q
    |||||||| ||||||||| |||| ||||||||||||||| ||||| ||||||| ||||    
T  11517268 aaaaacaattaaattaaattttgcaaaatgactattatgcacatataattaagaagat 11517325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 11524670 - 11524727
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagat 219  Q
    |||||||| ||||||||| |||| ||||||||||||||| ||||| ||||||| ||||    
T  11524670 aaaaacaattaaattaaattttgcaaaatgactattatgcacatataattaagaagat 11524727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 11532081 - 11532138
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagat 219  Q
    |||||||| ||||||||| |||| ||||||||||||||| ||||| ||||||| ||||    
T  11532081 aaaaacaattaaattaaattttgcaaaatgactattatgcacatataattaagaagat 11532138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 11539553 - 11539605
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaag 214  Q
    |||||||| ||||| ||| |||| ||||||||||||||| |||||||||||||    
T  11539553 aaaaacaattaaatgaaattttgcaaaatgactattatgcacataaaattaag 11539605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 42859071 - 42859163
Alignment:
Q  161 aaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||||||| ||||||| |||| |||||||| ||||||  ||| ||||||||||||| || ||||| || ||| | |||| | ||||||||    
T  42859071 aaaaaacaaatcaattaaattttgcaaaatgacgattatgcgcatgaaattaaggagataatgagttttaaaaaggaggattgtaaaattttg 42859163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 20405238 - 20405324
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  20405238 aaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggt 20405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 34992204 - 34992118
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  34992204 aaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggt 34992118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 13662223 - 13662098
Alignment:
Q  129 ttgtgatgagcattatccgtgattaatttttcaaaaaac-aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    |||||||||||||||||||| |||||||||| ||||||  |||||||||||| |||  |||||||| |||||| ||||||||||||||||||||| ||||    
T  13662223 ttgtgatgagcattatccgtaattaattttttaaaaaaataaataaattaaattttagaaaatgacaattatgcacataaaattaaggagatcatgagtt 13662124  T
Q  228 taaataagaaagattatgaaattttg 253  Q
    | |||||| ||||||||||| |||||    
T  13662123 ttaataaggaagattatgaatttttg 13662098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 252
Target Start/End: Complemental strand, 13662535 - 13662411
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    ||||||||||||||||||| | |||||||||| |||||| |||||||||||| |||  |||||||| |||||| ||||||||||||||||||||| ||||    
T  13662535 cttgtgatgagcattatccataattaattttttaaaaaataaataaattaaatttttgaaaatgacaattatgcacataaaattaaggagatcatgagtt 13662436  T
Q  228 taaataagaaagattatgaaatttt 252  Q
    | |||||| | ||||||||| ||||    
T  13662435 ttaataaggacgattatgaattttt 13662411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 253
Target Start/End: Complemental strand, 13661860 - 13661738
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    ||||||||||||||||   || |||||||||| |||   ||||||||||||| ||||||||||||| |||||| || |||||||||||| ||||| ||||    
T  13661860 cttgtgatgagcattaattgtaattaattttttaaa---caaataaattaaattttgtaaaatgaccattatgcacgtaaaattaaggaaatcatgagtt 13661764  T
Q  228 taaataagaaagattatgaaattttg 253  Q
    | |||||| | |||||||||||||||    
T  13661763 ttaataaggacgattatgaaattttg 13661738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 31721414 - 31721538
Alignment:
Q  129 ttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagttt 228  Q
    |||||||||||||||||||| ||| |||||| |||||||||||||| |||| |||  |||||||  |||||| || ||||| |||||||||||| |||||    
T  31721414 ttgtgatgagcattatccgtaatttattttttaaaaaacaaataaactaaatttttcaaaatgataattatgcacgtaaaagtaaggagatcattagttt 31721513  T
Q  229 aaataagaaagattatgaaattttg 253  Q
     ||| || | |||||| ||||||||    
T  31721514 taatcagcacgattataaaattttg 31721538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 253
Target Start/End: Complemental strand, 12012405 - 12012281
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    |||||||||| |||||||||| | |||||||  ||||| ||||||||| ||| |||| |||||||| |||||| |||| ||||||||||||| || ||||    
T  12012405 cttgtgatgaccattatccgtaactaattttataaaaa-caaataaataaaattttgcaaaatgaccattatgcacatgaaattaaggagataatgagtt 12012307  T
Q  228 taaataagaaagattatgaaattttg 253  Q
    | ||| || | |||||||||||||||    
T  12012306 ttaattaggaggattatgaaattttg 12012281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 12012598 - 12012703
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    |||||||||| |||||||||| |||| ||||| |||| ||||||||||||||  ||| |||||||| |||||| |||  |||| ||||||||||| ||||    
T  12012598 cttgtgatgaccattatccgtaattagttttttaaaa-acaaataaattaaatattgcaaaatgaccattatgcacaagaaatcaaggagatcatgagtt 12012696  T
Q  228 taaataa 234  Q
    | |||||    
T  12012697 ttaataa 12012703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 32981534 - 32981621
Alignment:
Q  166 acaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    |||||||||||||| |||| |||| ||| |||||| |||||||||||||||| || | ||||| |||||  | |||||||||||||||    
T  32981534 acaaataaattaaattttgcaaaacgaccattatgcacataaaattaaggagctcttgagttttaataaagacgattatgaaattttg 32981621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 32981193 - 32981281
Alignment:
Q  142 tatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaa 230  Q
    ||||||| |||||||||| |||| | |||||||||||| |||  | |||||| |||||| |||||||||| |||| ||||| |||||||    
T  32981193 tatccgtaattaatttttgaaaatataaataaattaaattttacataatgaccattatgcacataaaatttaggatatcatgagtttaa 32981281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 496121 - 496200
Alignment:
Q  173 aattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaatttt 252  Q
    ||||||| |||| |||||||| |||||| |||||||||||||||||| || ||||| ||  || | ||||||||||||||    
T  496121 aattaaattttgcaaaatgaccattatgcacataaaattaaggagataatgagttttaaagaggatgattatgaaatttt 496200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 32981653 - 32981750
Alignment:
Q  154 atttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaatttt 252  Q
    ||||||| |||||||||||||||||| |||  ||||| || |||||| |||||||||||| || ||||| ||||| ||||||   | ||||||||||||    
T  32981653 atttttctaaaaacaaataaattaaattttacaaaataacaattatgcacataaaattaa-gaaatcatgagttttaataaggtcgtttatgaaatttt 32981750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 495994 - 496073
Alignment:
Q  174 attaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    |||||| |||| |||||||| |||||| ||||||| ||||||||||||| |||||  |  || | |||||||||||||||    
T  495994 attaaattttgcaaaatgaccattatgcacataaagttaaggagatcatgagttttgaagaggacgattatgaaattttg 496073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 4334025 - 4333939
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  4334025 aaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggt 4333939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 13661702 - 13661651
Alignment:
Q  202 acataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    |||||||||||| |||||||| ||||| |||||||| || ||||||||||||    
T  13661702 acataaaattaaagagatcatgagttttaataagaacgaatatgaaattttg 13661651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 21631274 - 21631188
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  21631274 aaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggt 21631188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 42371262 - 42371388
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    |||||||||| | || ||||| ||||||||||    ||| |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| |  ||||    
T  42371262 cttgtgatgatcgttgtccgtaattaatttttttttaaaaaaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataacgagtt 42371360  T
Q  228 taaataagaaagattatgaaattttggt 255  Q
    | |||||| |  ||||||||||||||||    
T  42371361 ttaataaggattattatgaaattttggt 42371388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 29530538 - 29530657
Alignment:
Q  134 atgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaata 233  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||| |||| | || |||||||||||||||||| ||||| ||||    
T  29530538 atgatcattatcagtgattaattttttaaaaaacaaataaattaaattttgcaaaatgaccattacgcacgtaaaattaaggagatcatgagttttaata 29530637  T
Q  234 agaaagattatgaaattttg 253  Q
    || | |||||||||||||||    
T  29530638 aggacgattatgaaattttg 29530657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 42588045 - 42588169
Alignment:
Q  129 ttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagttt 228  Q
    |||| |||| |||||||||| |||||||||| |||| | ||||||||| || |||||||||| || || |   | ||||||||||||| ||||||| |||    
T  42588045 ttgtaatgatcattatccgtaattaattttttaaaacataaataaatttaattttgtaaaataaccatcacatatataaaattaaggacatcataaattt 42588144  T
Q  229 aaataagaaagattatgaaattttg 253  Q
     ||||||||  ||||||||||||||    
T  42588145 taataagaacaattatgaaattttg 42588169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 7668098 - 7668185
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||||| |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  7668098 aaataaattaaactttgaaaaatgacaattatgcacatgaaattaagaagataatgagttttaataaggattattatgaaattttggt 7668185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 44602757 - 44602674
Alignment:
Q  169 aataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaatttt 252  Q
    ||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||| ||||| ||| || | ||| ||||||||||    
T  44602757 aataaattaaattttgcaaaatgaccattatgcacataaagttaaggagatcatgagttttaatgaggacgatcatgaaatttt 44602674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 44602546 - 44602468
Alignment:
Q  130 tgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaa 208  Q
    ||||||||| ||||||||  ||||||| ||  |||||||||||||||||| |||| |||||||| |||||| |||||||    
T  44602546 tgtgatgagtattatccgcaattaattgttttaaaaacaaataaattaaattttgcaaaatgacaattatgcacataaa 44602468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 29237411 - 29237342
Alignment:
Q  186 aaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||| |||||| ||||||||||||||||||||| ||||| ||  || | |||||||||||||||||    
T  29237411 aaaatgaccattatgcacataaaattaaggagatcatgagttttaaagaggacgattatgaaattttggt 29237342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 44602969 - 44602910
Alignment:
Q  169 aataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagttt 228  Q
    ||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||| |||||    
T  44602969 aataaattaaattttgcaaaatgaccattatgcacataaagttaaggagatcatgagttt 44602910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 46736493 - 46736580
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||||| |||||| |||| |||||||| |||| || ||||| |||||| |  ||||| ||||||||||    
T  46736493 aaataaattaaactttgaaaaatgacaattatgcacatgaaattaagaagataatgagttttaataaggattattattaaattttggt 46736580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 15445027 - 15444968
Alignment:
Q  163 aaaacaaat-aaattaaagtttgtaaaatgactattatgaacataaaattaaggagatca 221  Q
    ||||||||| |||||||| |||||||||| |  |||||| ||||||||||||||||||||    
T  15445027 aaaacaaattaaattaaattttgtaaaatcatcattatgcacataaaattaaggagatca 15444968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 46369816 - 46369902
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  46369816 aaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggt 46369902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 12308090 - 12308016
Alignment:
Q  171 taaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatg 245  Q
    ||||||||| |||| ||||||   |||||| | ||||||||||||||||||| ||||| |||||| | |||||||    
T  12308090 taaattaaattttgcaaaatgctcattatgcatataaaattaaggagatcatgagttttaataaggacgattatg 12308016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 42586328 - 42586377
Alignment:
Q  204 ataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||||||||||| ||| ||||| |||||||| |||||| ||||||||    
T  42586328 ataaaattaaggagaacatgagttttaataagaacgattattaaattttg 42586377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 2491799 - 2491681
Alignment:
Q  137 agcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataaga 236  Q
    |||||||||| | ||||||||||  |||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||| | ||| ||||||     
T  2491799 agcattatccataattaatttttttaaaaacaaataaattaaattttgcaaaatgaccattatgcacataaaattaaggagatcattaattttaataagg 2491700  T
Q  237 aagattatgaaattttggt 255  Q
    | |||||||||||||||||    
T  2491699 acgattatgaaattttggt 2491681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 27530107 - 27529986
Alignment:
Q  131 gtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaa 230  Q
    |||||||| ||| || || |||| ||||| |||||||||||| |||||| ||||  ||||||| |||||| |||||||||||| |||||||| ||||| |    
T  27530107 gtgatgagaattgtctgtaattagttttttaaaaaacaaatatattaaattttgcgaaatgaccattatgcacataaaattaaagagatcatgagtttta 27530008  T
Q  231 ataagaaagattatgaaatttt 252  Q
    | ||| |  |||||||||||||    
T  27530007 agaaggacaattatgaaatttt 27529986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 11984089 - 11983997
Alignment:
Q  161 aaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||  || ||||| || ||  | |||||||||||||||    
T  11984089 aaaaaacaaataaattaaattttgcaaaatgactgttatgcacataaaattaaggagactatgagttttaacaaagacgattatgaaattttg 11983997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 11983803 - 11983721
Alignment:
Q  171 taaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||||| ||||| |||||||| ||||| |||||||||||||||||  || ||||| |||||||| ||||||||| |||||    
T  11983803 taaattaaattttgtgaaatgactgttatgcacataaaattaaggagactatgagttttaataagaacgattatgaagttttg 11983721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 44468977 - 44469068
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    |||||||| |||| |||| |||| |||||||| |||||| |||||||||||||| |||||| ||||| ||  || | |||||||||||||||    
T  44468977 aaaaacaattaaaataaattttgcaaaatgacgattatgcacataaaattaaggtgatcatgagttttaaataggacgattatgaaattttg 44469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 50908575 - 50908657
Alignment:
Q  171 taaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||||| |||| |||||||| |||||| ||||||||||||||||||| | ||||| ||  || | |||||||||||||||    
T  50908575 taaattaaattttgcaaaatgaccattatgcacataaaattaaggagatcgtgagttttaaagaggacgattatgaaattttg 50908657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 14204041 - 14203956
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    |||||||||||| |||| |||||||| |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||    
T  14204041 aaataaattaaactttgaaaaatgacaattatgcacatgaaattaagaagataatgagttttaataaggattattatgaaattttg 14203956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 45332607 - 45332535
Alignment:
Q  150 attaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcat 222  Q
    |||||||||| ||||||||||||||||||| ||||||||||||   ||||| | | |||||||| ||||||||    
T  45332607 attaattttttaaaaaacaaataaattaaattttgtaaaatgatcgttatgcatacaaaattaaagagatcat 45332535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 9604058 - 9604167
Alignment:
Q  143 atccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagatt 242  Q
    |||||| |||||| ||| ||||||||||||||||||| |||| |||||||| | |||| | ||||||||||  ||||| | | |||  ||||| | ||||    
T  9604058 atccgtaattaatcttt-aaaaaacaaataaattaaattttgcaaaatgaccactatgcatataaaattaaaaagatcgtgaattttcataaggacgatt 9604156  T
Q  243 atgaaattttg 253  Q
    |||||||||||    
T  9604157 atgaaattttg 9604167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 11130831 - 11130749
Alignment:
Q  171 taaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||||| |||| ||| |||| |||||| ||||||||| ||||||||||| ||||| ||  || | |||||||||||||||    
T  11130831 taaattaaattttgcaaattgaccattatgcacataaaatcaaggagatcatgagttttaaagaggacgattatgaaattttg 11130749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 50908762 - 50908844
Alignment:
Q  171 taaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||||| |||| ||||||||  ||||| |||||||||||| |||||| | ||||| || ||| | |||||||||||||||    
T  50908762 taaattaaattttgcaaaatgacctttatgcacataaaattaaagagatcgtgagttttaaaaaggatgattatgaaattttg 50908844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 567190 - 567113
Alignment:
Q  139 cattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaagga 216  Q
    |||||| ||| ||||||||||  |||||||||||||||||| |||  |||||||| ||||||   |||||||||||||    
T  567190 cattatgcgttattaatttttttaaaaacaaataaattaaattttacaaaatgaccattatgcttataaaattaagga 567113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 11983960 - 11983903
Alignment:
Q  161 aaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggaga 218  Q
    ||||||||||||||||||| ||||  |||||||| ||||| | |||||||||||||||    
T  11983960 aaaaaacaaataaattaaattttgcgaaatgactgttatgcatataaaattaaggaga 11983903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 37082544 - 37082458
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  37082544 aaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggt 37082458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 45341776 - 45341741
Alignment:
Q  141 ttatccgtgattaatttttcaaaaaacaaataaatt 176  Q
    |||||||| |||||||||||||||||||||||||||    
T  45341776 ttatccgtaattaatttttcaaaaaacaaataaatt 45341741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 32095141 - 32095022
Alignment:
Q  134 atgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaata 233  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||| ||||| ||||    
T  32095141 atgaccattatccgtaattaattttttaaacaacaaataaattaaattttgcaaaatgaccattatgcacataaaattaaggagatcatgagttttaata 32095042  T
Q  234 agaaagattatgaaattttg 253  Q
    |  |  ||||||||||||||    
T  32095041 aagactattatgaaattttg 32095022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 253
Target Start/End: Complemental strand, 32094944 - 32094818
Alignment:
Q  128 cttgtgatgagcattatccgtgatta-atttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagt 226  Q
    |||||||||| | |||||||| |||| |||||| ||||||||||||||||| | |||| |||||||| |||||  ||| ||||||||||||||||  |||    
T  32094944 cttgtgatgacccttatccgtaattatatttttaaaaaaacaaataaattatattttgcaaaatgaccattatatacaaaaaattaaggagatcaagagt 32094845  T
Q  227 ttaaataagaaagattatgaaattttg 253  Q
    || |||||  | |||| ||||||||||    
T  32094844 tttaataatgacgattttgaaattttg 32094818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 21598813 - 21598712
Alignment:
Q  150 attaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaat 249  Q
    ||||||||||  |||||||| ||||||||| |||  ||||||||||||||| | |||||||||| ||||| || ||||| ||  || | |||||||||||    
T  21598813 attaattttt--aaaaacaattaaattaaattttacaaaatgactattatgcaaataaaattaaagagattatgagttttaaagaggacgattatgaaat 21598716  T
Q  250 tttg 253  Q
    ||||    
T  21598715 tttg 21598712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 38858141 - 38858231
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    |||||||||||| ||||| ||| ||||||||| |||||| |||| | |||||||||||||| ||||| |||||| |||||||||||||||||    
T  38858141 aaaaacaaataa-ttaaattttataaaatgaccattatgcacatgatattaaggagatcatgagttttaataaggaagattatgaaattttg 38858231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 347827 - 347700
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    |||||||||| |||| ||||| ||||||||||   |||| |||||||||||| |||| |||| ||| |||||| |||| |||||||| |||| || ||||    
T  347827 cttgtgatgatcattgtccgtaattaattttttttaaaaaaaataaattaaactttgaaaaacgacaattatgcacatgaaattaagaagataatgagtt 347728  T
Q  228 taaataagaaagattatgaaattttggt 255  Q
    | |||||| |  ||||| ||||||||||    
T  347727 ttaataaggattattataaaattttggt 347700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 23212653 - 23212733
Alignment:
Q  139 cattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagat 219  Q
    |||||||||| |||| ||||| |||| |||||||||||||| |||| ||||| || || ||| |||| |||||||| ||||    
T  23212653 cattatccgtaattagtttttaaaaacacaaataaattaaattttgcaaaataaccatcatgcacatgaaattaagaagat 23212733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 12275034 - 12275131
Alignment:
Q  155 tttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaatttt 252  Q
    ||||| || |||||||||||| ||| ||||||||  ||| |||||| ||||||||||||||||||||| ||||| |||||  | ||||||||||||||    
T  12275034 ttttttaataaacaaataaataaaattttgtaaacagacaattatgcacataaaattaaggagatcatgagttttaataacgatgattatgaaatttt 12275131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 253
Target Start/End: Complemental strand, 29700140 - 29700027
Alignment:
Q  140 attatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaag 239  Q
    ||||||||| ||||||||||  |||||||||||||| ||| ||   |||||||| |||||| |||| ||||||| |||||||| ||||| |||||| |      
T  29700140 attatccgtcattaatttttttaaaaacaaataaatgaaatttatcaaaatgaccattatgcacattaaattaaagagatcatgagttttaataaggaca 29700041  T
Q  240 attatgaaattttg 253  Q
    ||||||||||||||    
T  29700040 attatgaaattttg 29700027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 46997650 - 46997735
Alignment:
Q  164 aaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaat 249  Q
    |||||| ||||||||| ||||||||||||| |||||| |||||||||||| |||||||| ||||| || ||  | |||||||||||    
T  46997650 aaacaattaaattaaattttgtaaaatgacaattatgcacataaaattaatgagatcatgagttttaaaaaagacgattatgaaat 46997735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 17190388 - 17190467
Alignment:
Q  139 cattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggaga 218  Q
    ||||||||  ||||| || || ||||||||||||||||||| |||| ||||| ||| ||||| ||| |||||||||||||    
T  17190388 cattatccacgattatttatttaaaaaacaaataaattaaattttgcaaaattactgttatgcacacaaaattaaggaga 17190467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 29700365 - 29700258
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    |||||||||| |||||||||| ||||||| ||  |||||||||||||||||  |||| |||||| | || ||| | ||||||||| || |||| | ||||    
T  29700365 cttgtgatgaccattatccgtaattaattattttaaaaacaaataaattaatttttgcaaaatggccataatgcaaataaaattacggcgatcgtcagtt 29700266  T
Q  228 taaataag 235  Q
    | ||||||    
T  29700265 ttaataag 29700258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 34903273 - 34903194
Alignment:
Q  173 aattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaatttt 252  Q
    ||||||| |||| |||||||  |||||| ||||||||||||| ||||||||||||| |||| | | | ||||||||||||    
T  34903273 aattaaattttgcaaaatgatcattatgcacataaaattaagaagatcataagttttaatatggacggttatgaaatttt 34903194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 29700676 - 29700594
Alignment:
Q  129 ttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaatt 211  Q
    |||||||||  |||||| || |||||||||| |||| |||||||||||||| |||| |||||||| || ||  ||||||||||    
T  29700676 ttgtgatgacaattatcggtaattaattttttaaaatacaaataaattaaattttgaaaaatgaccatcatacacataaaatt 29700594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 11331985 - 11332078
Alignment:
Q  129 ttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcat 222  Q
    ||||||||| |||||||| | ||||||||   || ||| || ||||||||| |||| |||||||  |||||| || ||||||||||||||||||    
T  11331985 ttgtgatgaccattatccataattaatttaaaaataaaaaattaaattaaattttgcaaaatgatcattatgcacgtaaaattaaggagatcat 11332078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 11490006 - 11490099
Alignment:
Q  129 ttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcat 222  Q
    ||||||||| |||||||| | ||||||||   || ||| || ||||||||| |||| |||||||  |||||| || ||||||||||||||||||    
T  11490006 ttgtgatgaccattatccataattaatttaaaaataaaaaattaaattaaattttgcaaaatgatcattatgcacgtaaaattaaggagatcat 11490099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 7731176 - 7731300
Alignment:
Q  128 cttgtgatgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtt 227  Q
    |||||||||| | || ||||| |||| |||||  |||||  ||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||    
T  7731176 cttgtgatgatcgttgtccgtaattagtttttttaaaaa--aataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagtt 7731272  T
Q  228 taaataagaaagattatgaaattttggt 255  Q
    | |||||| |  ||||||||||||||||    
T  7731273 ttaataaggattattatgaaattttggt 7731300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 37392575 - 37392489
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  37392575 aaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggt 37392489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 39313491 - 39313610
Alignment:
Q  134 atgagcattatccgtgattaatttttcaaaaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaata 233  Q
    |||| ||||||| ||  |||||||||   ||||||||||||||||| |||| ||||||||  |||   ||||||||||||||| || ||  |||| ||||    
T  39313491 atgaccattatctgtagttaattttttttaaaacaaataaattaaattttgcaaaatgacatttagacacataaaattaaggaaattatgtgttttaata 39313590  T
Q  234 agaaagattatgaaattttg 253  Q
    || | ||||||| |||||||    
T  39313591 aggatgattatgtaattttg 39313610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 41771074 - 41770988
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggt 255  Q
    |||||||||||| |||| |||||| | |||||| |||| |||||||| |||| || ||||| |||||| |  ||||||||||||||||    
T  41771074 aaataaattaaactttgaaaaatg-caattatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggt 41770988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 43762952 - 43763034
Alignment:
Q  171 taaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||||| |||  |||||||| |||||| |||| |||||||||||||||| || || ||  || | |||||||||||||||    
T  43762952 taaattaaaattttcaaaatgaccattatgcacattaaattaaggagatcatgagctttaaagaggacgattatgaaattttg 43763034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 48217864 - 48217774
Alignment:
Q  163 aaaacaaataaattaaagtttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttg 253  Q
    ||||||| |||| ||||  ||| ||||| || |||||| ||||||||||||||||||||| | ||| ||  || | |||||||||||||||    
T  48217864 aaaacaattaaaataaatcttgcaaaataacaattatgcacataaaattaaggagatcattaattttaaagaggacgattatgaaattttg 48217774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 18208549 - 18208637
Alignment:
Q  162 aaaaacaaataaattaaagtttgtaaaat-gactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaat 249  Q
    |||||||| ||||||||| |||| ||||  ||| |||||  ||||||||||||||||||||| ||||| ||  || | |||||||||||    
T  18208549 aaaaacaattaaattaaattttgcaaaaacgaccattatccacataaaattaaggagatcatgagttttaaagaggacgattatgaaat 18208637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 29699862 - 29699814
Alignment:
Q  168 aaataaattaaagtttgtaaaatgactattatgaacataaaattaagga 216  Q
    |||||||||||| |||| ||||| ||||||||| ||| |||||||||||    
T  29699862 aaataaattaaattttgcaaaataactattatgtacaaaaaattaagga 29699814  T

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Target: scaffold0712 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 1269 - 1309
Alignment:
Q  139 cattatccgtgattaatttttcaaaaaacaaataaattaaa 179  Q
    |||||||||| ||||| ||||||||||| ||||||||||||    
T  1269 cattatccgtaattaagttttcaaaaaataaataaattaaa 1309  T

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Target: scaffold0709 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 1289 - 1329
Alignment:
Q  139 cattatccgtgattaatttttcaaaaaacaaataaattaaa 179  Q
    |||||||||| ||||| ||||||||||| ||||||||||||    
T  1289 cattatccgtaattaagttttcaaaaaataaataaattaaa 1329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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