View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17758_high_48 (Length: 238)
Name: NF17758_high_48
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4528110 - 4528339
Alignment:
| Q |
1 |
caccagtcccatgaaattgattcatctgcattacaattaaaatttcatgcaca--------caatttaattaaaactttaggtcacaaaatagataatga |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4528110 |
caccagtcccatgaaattgattcatctgcattacaattaaaatttcatgcacacatacacacaatttaattaaaactttaggtcacaaaatagataatga |
4528209 |
T |
|
| Q |
93 |
ctaaaaccttaccatggggggtgaatagccattgtttctcttttgaattgttgtagggtaagaccaaccatgatttgattcactagacaaattcctaggt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4528210 |
ctaaaaccttaccatggggggtgaatagccattgtttctcttttgaattgttgtagggtaagaccaaccatgatttgattcactagacaaattcctaggt |
4528309 |
T |
|
| Q |
193 |
ggagaatttccagaatcagattggcttcct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4528310 |
ggagaatttccagaatcagattggcttcct |
4528339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 16994483 - 16994646
Alignment:
| Q |
61 |
attaaaactttaggtcacaaaatagataatgactaaaaccttaccatgggg---ggtgaatagccattgtttctcttttgaattgttgtagggtaagacc |
157 |
Q |
| |
|
||||| |||||||||||||| ||| ||| |||||||||||| ||||| || |||| ||| |||||||||||||||||||| | | ||||||||||| |
|
|
| T |
16994483 |
attaagactttaggtcacaatataaatattgactaaaacctcaccataggttttggtggataaccattgtttctcttttgaatattggcagggtaagacc |
16994582 |
T |
|
| Q |
158 |
aaccatgatttgattcactagacaaattcctaggtggagaatttccagaatcagattggcttcc |
221 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
16994583 |
aaccatgattggattcactagccaaactcctagatggagaattttcaggatcagattggcttcc |
16994646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University