View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_high_53 (Length: 219)
Name: NF17758_high_53
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_53 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 38829291 - 38829493
Alignment:
| Q |
17 |
tgtggatttagctgaattactccttgcatgaggcctgcagtgaaattcattttggaggatggacttggaatagaattccttatagattgtgctctaatgg |
116 |
Q |
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| T |
38829291 |
tgtggatttagctgaattactccttgcatgaggcctgcagtgaaattcattttggaggatggacttggaatagaattccttatagattgtgctctaatgg |
38829390 |
T |
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| Q |
117 |
aacatggttgtgagtatctttgccttaaagggattcgaaactcttccatgtttttacttgaactgaaatgatcaagtgaatcatcatcttccatttctga |
216 |
Q |
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| T |
38829391 |
aacatggttgtgagtatctttgccttaaagggattggaaactcttccatgtttttacttgaactgaaatgatcaagtgaatcatcatcttccatttctga |
38829490 |
T |
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| Q |
217 |
gaa |
219 |
Q |
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| T |
38829491 |
gaa |
38829493 |
T |
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