View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17758_high_8 (Length: 560)
Name: NF17758_high_8
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_high_8 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 162 - 474
Target Start/End: Original strand, 48187536 - 48187848
Alignment:
| Q |
162 |
ctttgttccactatctttatacattcacagttaaatacttaataacttagtttcatacttgaggtactcctgatccgtactaagggctttggtttggttt |
261 |
Q |
| |
|
|||||||| |||| || ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48187536 |
ctttgttctactacctctataccttcacaattaaatacttaataacttagtttcatacttgaggtactcctgatccgtactaagggctttggtttggttt |
48187635 |
T |
|
| Q |
262 |
aaggtaactaactcctgcctggttaattactttgttatcaaaatataatatagtaaacacgagtattaaatataactataattattatgctattgactac |
361 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
48187636 |
aaggtaactaactcttgcctggttaattactttgttgtcaaaatataatatagtaaacacgagtattaaatataactataattactatgttattgactac |
48187735 |
T |
|
| Q |
362 |
tcaatttctttaactagagtacctatatgggtaacattttaaatacactttgatgagtaaaaataaagactatatatgcaatttatttaattaaaataat |
461 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48187736 |
tcaatatctttaactagagtacctatatgggtaacattttaaatacactttgatgagtaaaaataaagactataaatgcaatttatttaattaaaataac |
48187835 |
T |
|
| Q |
462 |
ttcaaacaagttt |
474 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48187836 |
ttcaaacaagttt |
48187848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 48187380 - 48187501
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48187380 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtatggaagcgc |
48187479 |
T |
|
| Q |
101 |
gtggagtgatgcccttaccttt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48187480 |
gtggagtgatgcccttaccttt |
48187501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 21268226 - 21268348
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21268226 |
cacatcaccaatatatagcacatagcactcatttcaaaacaacaacactataataatcatcacaacacaaatatatacacacatacacgtacggaagcgc |
21268325 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctttg |
123 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
21268326 |
gtgaagtgatgcccttacctttg |
21268348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16421703 - 16421583
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | || |
|
|
| T |
16421703 |
cacatcaccaatatataacacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaa--atagtcacacatacacgtacggacgtgc |
16421606 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctttg |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
16421605 |
gtggagtgatgcccttacctttg |
16421583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 36018000 - 36017877
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcg |
99 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| |||||||||||| || ||||||||| |||||||||||| ||||| |||| |||||||||||||||| |
|
|
| T |
36018000 |
cacaacaccaatatataacacataatcattcatttcaaaacaacaccaatatgataattatcacaacacaattatatacacatatacacgtacggaagca |
36017901 |
T |
|
| Q |
100 |
cgtggagtgatgcccttacctttg |
123 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36017900 |
cgtggagtgatgcccttacctttg |
36017877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 11283401 - 11283522
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcg |
99 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| ||| |||||||| || ||||||||| |||||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
11283401 |
cacaacaccaatatataacacataatcattcatttctaaacaacatcattatgataattatcacaacacaattatacacacatatacacgtacggaagcg |
11283500 |
T |
|
| Q |
100 |
cgtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11283501 |
cgtggagtgatgcccttacctt |
11283522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 12528761 - 12528858
Alignment:
| Q |
26 |
cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttacctttg |
123 |
Q |
| |
|
|||||| |||||||||||| || ||||| ||| |||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12528761 |
cattcatttcaaaacaacaccattatgacaattatcataacacaattatatacacatatacacgtacggaagcgcgtggagtgatgcccttacctttg |
12528858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 16484042 - 16483973
Alignment:
| Q |
52 |
gataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16484042 |
gataattatcacaacacaaatatatacacatatacacgtacggaagcgcgtggagtgatgcccttacctt |
16483973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 28384125 - 28384009
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
|||| ||| |||||||| |||||| |||||| ||||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||| ||| || |
|
|
| T |
28384125 |
cacaccacgaatatataacacataacattcatttcaaaacaacaacattatgataattatcaaaacacagatatat----acatacacgtaccgaaatgc |
28384030 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||||||||| | |||||||| |
|
|
| T |
28384029 |
gtggagtgatactcttacctt |
28384009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 28393000 - 28392884
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| ||||||||||||||| ||| ||||| |||| || |||||||||| |||||||| || ||| ||| |
|
|
| T |
28393000 |
cacaccaccaatatataacacataacattcatttcaaaacaacaacattataataattatcaaaaaacaaatatat----acatacacacaccgaaacgc |
28392905 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||||||||||| ||| |||| |
|
|
| T |
28392904 |
gtggagtgatgctcttgcctt |
28392884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 44668935 - 44668815
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44668935 |
cacatcaccaatatatagcacataacattcacttcaaa-caacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
44668837 |
T |
|
| Q |
101 |
gtggagtgatgcccttaccttt |
122 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
44668836 |
gtagagtgatgcccttaccttt |
44668815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 5537105 - 5537228
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcg |
99 |
Q |
| |
|
|||| ||||| |||||| |||||| |||||| |||||||||||| || ||||||||| ||||| |||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
5537105 |
cacaacaccactatataacacataatcattcatttcaaaacaacaccattatgataattatcactacacaattatatacacatatacacgtacggaagcg |
5537204 |
T |
|
| Q |
100 |
cgtggagtgatgcccttacctttg |
123 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
5537205 |
cgtggagtgatgctgttacctttg |
5537228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 6818578 - 6818492
Alignment:
| Q |
36 |
aaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttaccttt |
122 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |||||||||| || | |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6818578 |
aaaacaacaccactatgataattatcacaatacaaatatatacaaatatacacgtacataagcgcgtggagtgatgcccttaccttt |
6818492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 3897314 - 3897438
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaa--atatattcacacatacacgtacggaag |
97 |
Q |
| |
|
|||| ||| ||||| || ||||||| |||||| |||||||||||| ||| | ||||| |||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
3897314 |
cacaacacaaatatgtaacacatagtcattcatttcaaaacaacaccaccaaaataattatcacaacacaattatatatatacatatacacgtacggaaa |
3897413 |
T |
|
| Q |
98 |
cgcgtggagtgatgcccttaccttt |
122 |
Q |
| |
|
| ||||||||||| ||||||||||| |
|
|
| T |
3897414 |
cacgtggagtgatacccttaccttt |
3897438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 15418973 - 15418853
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15418973 |
cacatcaccaatatataaaacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatatacgtacggaagcgt |
15418874 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctt |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15418873 |
gtggagtgatgcccttacctt |
15418853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 15425990 - 15425870
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15425990 |
cacatcaccaatatatagaacatagcattcacttcaaaacaacaatactatgataatcatcacaacacaaatatattcacacatatacgtacggaagcgt |
15425891 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctt |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15425890 |
gtggagtgatgcccttacctt |
15425870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 28654450 - 28654572
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcg |
99 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| ||||||||||| || ||||||||| ||||||||| || ||||| |||| |||||||||||||| || |
|
|
| T |
28654450 |
cacaacaccaatatataacacataatcattcatttcaaaacaaccccattatgataattatcacaacagaattatatacacatatacacgtacggaaacg |
28654549 |
T |
|
| Q |
100 |
cgtggagtgatgcccttaccttt |
122 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28654550 |
cgtggagtgatgcccttaccttt |
28654572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 52944768 - 52944725
Alignment:
| Q |
78 |
cacacatacacgtacggaagcgcgtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
52944768 |
cacatatacatgtacggaagcgtgtggagtgatgcccttacctt |
52944725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 18902018 - 18901896
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18902018 |
cacatcaccaatatatagcacatatcattcacttcaaaacaacaacactataataatcatcacaacacaaatatattcacaaatacacgtacggaagcgc |
18901919 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctttg |
123 |
Q |
| |
|
||||| |||| |||||||||||| |
|
|
| T |
18901918 |
gtggaatgatacccttacctttg |
18901896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 18153449 - 18153328
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcg |
99 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| |||||||||||| || ||||||||| ||||| |||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
18153449 |
cacaacaccaatatataacacataatcattcatttcaaaacaacaccattatgataattatcaccacacaattatatacacatatacacgtacggaagcg |
18153350 |
T |
|
| Q |
100 |
cgtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18153349 |
cgtggagtgatgcccttacctt |
18153328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 51783494 - 51783595
Alignment:
| Q |
22 |
atagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| | |||| ||||||||||||||||| |||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
51783494 |
atagcatttacttcaaaacaacaacactataataatcattataacataaatatattcacacatatacgtacagaagcacgtggagtgatgcctttacctt |
51783593 |
T |
|
| Q |
122 |
tg |
123 |
Q |
| |
|
|| |
|
|
| T |
51783594 |
tg |
51783595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19932787 - 19932666
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
19932787 |
cacatcagcaatatatagcacatagcattcacttcaaaacaacaacactataataatcatcacgacacaaatatattcataaatacacgtacggaagcgc |
19932688 |
T |
|
| Q |
101 |
gtggagtgatgcccttaccttt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19932687 |
gtggagtgatgcccttaccttt |
19932666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1311527 - 1311405
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1311527 |
cacatcaccaatatataacacatagtattcacttcaaaacaacaacactataataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
1311428 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctttg |
123 |
Q |
| |
|
|||||||||| | ||||| |||| |
|
|
| T |
1311427 |
gtggagtgatactcttacatttg |
1311405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 11034936 - 11035057
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcg |
99 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| |||||||||||| || ||||||||| |||||||||||| ||||| |||| ||||| |||||||| || |
|
|
| T |
11034936 |
cacaacaccaatatataacacataatcattcatttcaaaacaacatcattatgataattatcacaacacaattatatacacatatacatgtacggaaacg |
11035035 |
T |
|
| Q |
100 |
cgtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
11035036 |
cgtgaagtgatgcccttacctt |
11035057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 3224778 - 3224669
Alignment:
| Q |
11 |
atatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgat |
110 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||||| || |||| |||| |||||||||||||||||| || ||||| |||||||| ||||||||||||| |
|
|
| T |
3224778 |
atatatagcacataacattcatttcaaa-caacagcaatatgctaattatcacaacacaaatatataatcatatacatgtacggaaacgcgtggagtgat |
3224680 |
T |
|
| Q |
111 |
gcccttacctt |
121 |
Q |
| |
|
||||||||||| |
|
|
| T |
3224679 |
gcccttacctt |
3224669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 24540696 - 24540576
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24540696 |
cacatcaccaatatataaaacatagcattcacttcaaaacaacaacaatatgataatcatcacaacacaaatatattcacacataaacgtacggaagcgt |
24540597 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
24540596 |
gtggagtgatacccttacctt |
24540576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 3509888 - 3509768
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3509888 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatggtaaccatcacaacacaa--atattcacacatacacatacggaagcgc |
3509791 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctttg |
123 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
3509790 |
atggaatgatgcccttacctttg |
3509768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 15277930 - 15277846
Alignment:
| Q |
6 |
caccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgt |
90 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||||||| | |||| |||| |||| ||||||||||||| ||||||||||||| |
|
|
| T |
15277930 |
caccaatatataacacatagcattcatttccaaacaacaatattatgttaattatcaaaacacaaatatatacacacatacacgt |
15277846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10415 - 10295
Alignment:
| Q |
1 |
cacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | || |
|
|
| T |
10415 |
cacatcaccaatatataacacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaa--atagtcacacatacacgtacggacgtgc |
10318 |
T |
|
| Q |
101 |
gtggagtgatgcccttacctttg |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10317 |
gtggagtgatgcccttacctttg |
10295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 7573 - 7491
Alignment:
| Q |
41 |
aacaacactatgataatcatcacaacacaaata--tattcacacatacacgtacggaagcgcgtggagtgatgcccttacctt |
121 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7573 |
aacaacaccatgataattatcacaacacaaatagatatataaacatacatgtacggaagcgcgtggagtgatgcccttacctt |
7491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 32870275 - 32870353
Alignment:
| Q |
44 |
aacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttaccttt |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||||| || ||||||||||| |
|
|
| T |
32870275 |
aacactatgataatcatcacaacataaatatatacacatatatacgtacggaagcacgtggagcgaaacccttaccttt |
32870353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 34716 - 34785
Alignment:
| Q |
53 |
ataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttaccttt |
122 |
Q |
| |
|
||||| ||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34716 |
ataattatcacaacacagttatatatacatatacacgtacggaaacgcgtggagtgatgcccttaccttt |
34785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 2039006 - 2038937
Alignment:
| Q |
53 |
ataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttaccttt |
122 |
Q |
| |
|
||||| ||||||||||| ||||| ||| ||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
2039006 |
ataattatcacaacacagttatatatacatatacatgtacggaagcacgtggagtgatgtccttaccttt |
2038937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 29963185 - 29963229
Alignment:
| Q |
78 |
cacacatacacgtacggaagcgcgtggagtgatgcccttaccttt |
122 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29963185 |
cacacacacacgtacggaagcgcgtggagtgatatccttaccttt |
29963229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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