View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_11 (Length: 546)
Name: NF17758_low_11
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Complemental strand, 13944810 - 13944289
Alignment:
| Q |
16 |
agtaataagtcccttgctaaataccatttctgacttatccatgttgattttctggctagagattctttggtcttctgtaaaggtttccataagatattta |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944810 |
agtaataagtcccttgctaaatgccatttctgacttatccatgttgattttctggctagagattctttggtcttctgtaaaggtttccataagatattta |
13944711 |
T |
|
| Q |
116 |
gcttcttctagtttggttctgcaaaacagtatactgtcatcttcgaaaaataaacatggataagtcagaaaaatagatgagagattggaggtgcttgagt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13944710 |
gcttcttctagtttggttctgcaaaacagtatactgtcatcattgaaaaataaacatggataagtcagaaaaatagatgagagattagaggtgcttgagt |
13944611 |
T |
|
| Q |
216 |
agctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaataataaagagatagggagagaatccc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944610 |
agctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaataataaagagatagggagagaatccc |
13944511 |
T |
|
| Q |
316 |
cctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaatacataaaataatggttctaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13944510 |
cctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaacacataaaataatggttctaat |
13944411 |
T |
|
| Q |
416 |
catcttcgacaggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgccaacaact |
515 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944410 |
catcttcgacaggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgccaacaact |
13944311 |
T |
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| Q |
516 |
ccttttcttttattagtattat |
537 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
13944310 |
ccttttcttttattagtattat |
13944289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Complemental strand, 14085999 - 14085478
Alignment:
| Q |
16 |
agtaataagtcccttgctaaataccatttctgacttatccatgttgattttctggctagagattctttggtcttctgtaaaggtttccataagatattta |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085999 |
agtaataagtcccttgctaaatgccatttctgacttatccatgttgattttctggctagagattctttggtcttctgtaaaggtttccataagatattta |
14085900 |
T |
|
| Q |
116 |
gcttcttctagtttggttctgcaaaacagtatactgtcatcttcgaaaaataaacatggataagtcagaaaaatagatgagagattggaggtgcttgagt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14085899 |
gcttcttctagtttggttctgcaaaacagtatactgtcatcattgaaaaataaacatggataagtcagaaaaatagatgagagattagaggtgcttgagt |
14085800 |
T |
|
| Q |
216 |
agctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaataataaagagatagggagagaatccc |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085799 |
agctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaataataaagagatagggagagaatccc |
14085700 |
T |
|
| Q |
316 |
cctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaatacataaaataatggttctaat |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14085699 |
cctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaacacataaaataatggttctaat |
14085600 |
T |
|
| Q |
416 |
catcttcgacaggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgccaacaact |
515 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085599 |
catcttcgacaggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgccaacaact |
14085500 |
T |
|
| Q |
516 |
ccttttcttttattagtattat |
537 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
14085499 |
ccttttcttttattagtattat |
14085478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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