View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_12 (Length: 535)
Name: NF17758_low_12
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 9574470 - 9574980
Alignment:
| Q |
19 |
ttatcaccaatatatactcaataataagagatatatcttcttttgttgggacatccagcccagtctgtgtttgtataagtgagtagttttccnnnnnnnn |
118 |
Q |
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| T |
9574470 |
ttatcaccaatatatactcaataattagagatatatcttcttgtgtcgggacatctagcccagtctatgtttgtataagcgagtagttt--cgagagagg |
9574567 |
T |
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| Q |
119 |
nnnnnnnnntataggttgaggctaaactcaatagtgccatgaat------aataatacttttcaaaaagacatgtgttgtgtttttgggttatgtataaa |
212 |
Q |
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| T |
9574568 |
agagagagatataggttgaggctaaactcaatagtgccatgaatgtaatgaataatacttttcataaagacatgtgttgtgtttttggggtatgtataaa |
9574667 |
T |
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| Q |
213 |
caagcacacttcttgaacttcagaagagatatttgatcttgtaaatgtcaggtattgcaaagatcaagcgaggttatgatattatgttggatcttcatag |
312 |
Q |
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| T |
9574668 |
caagcacacttcttgaacttcataagagatatttgatcttgtaaatgtcaggtactacaatgctcaagcgaggctatgatattatgttggatcttcatag |
9574767 |
T |
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| Q |
313 |
gagtttcttgaagaaccactgagttttgcctttgtattcacatgtgtgggtgatgacttgccagcagacatacatgtgtgctcaataacttcctctgcat |
412 |
Q |
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| T |
9574768 |
gggtttcatgaagaaccactgagttttgcctttgtattcacatgtatgggtgatgacttgccagtagacatacatgtgtgctcaataacttcctctgcat |
9574867 |
T |
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| Q |
413 |
atttattttgagaaagaaaaataactggacggg--tgatgacttcacgaaaaattcaaagttaagcttagacataatcaattcataaagagagtcagaag |
510 |
Q |
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| T |
9574868 |
atttattttgagaaagaaaaataactggacgggcctcaatccttcatggaaaattcaaagttaagcttagacataatcaattcataaagatagtcagaag |
9574967 |
T |
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| Q |
511 |
aagcggcaagaat |
523 |
Q |
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| T |
9574968 |
aagcggcaagaat |
9574980 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 25745419 - 25745339
Alignment:
| Q |
180 |
agacatgtgttgtgtttttgggttatgtataaacaagcacacttcttgaacttcagaagagatatttgatcttgtaaatgt |
260 |
Q |
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| T |
25745419 |
agacatatgttatgtttttggatcatgcataaacaagcatacatgttgaactacataagagatatctggtcttgtaaatgt |
25745339 |
T |
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