View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_17 (Length: 460)
Name: NF17758_low_17
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 29253884 - 29253451
Alignment:
| Q |
7 |
tcgaagaaaatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253884 |
tcgaacaaaatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc |
29253785 |
T |
|
| Q |
107 |
taatgaagacattcaatcaatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253784 |
taatgaagacattcaatcaatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtac |
29253685 |
T |
|
| Q |
207 |
attgttgttgggaatgaaataaatcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaact |
306 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29253684 |
attgttgttgggaatgaaataaatcctagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaatatttattcagcacttgcatctgccaact |
29253585 |
T |
|
| Q |
307 |
tgcaaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253584 |
tgcaaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccata |
29253485 |
T |
|
| Q |
407 |
tataacttcaatagttggttttcttgtgaacacc |
440 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29253484 |
tataacttcaatagttggttttcttgtgaacacc |
29253451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 29 - 422
Target Start/End: Original strand, 29288033 - 29288426
Alignment:
| Q |
29 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
128 |
Q |
| |
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||||||||||||| |||||||||||||||| || || || |||||| ||| || ||||| |||||||||| ||||||||||||||||||||| |
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| T |
29288033 |
aatgagaatatatgatcctgatcaagcaaccttagaggctctaagaggctctaatatagaacttgttattggggtccgtaatgaagacattcaatcaatt |
29288132 |
T |
|
| Q |
129 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtacattgttgttgggaatgaaataa |
228 |
Q |
| |
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||| | | |||||||||| | |||||||||||||||||| |||||||||||| ||| || || || ||||||||||||||||||||||||||||||| |
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| T |
29288133 |
gcctatagtgtttcatcagctactaattgggtccaaaacaacatactaaaatactctcaagacgtaaagtttaggtacattgttgttgggaatgaaataa |
29288232 |
T |
|
| Q |
229 |
atcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaagatttc |
328 |
Q |
| |
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|||| |||||||| |||||||| |||||||||| | ||||||||||||||||||| ||||||| |||||| |||| | ||||||||||||||| |||| |
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| T |
29288233 |
atcctagtaatgatgcaacatcaaaatttgttctacttgcaatgcagaacatttatacagcactagcatcttccaatctacaaaatcaaattaaggtttc |
29288332 |
T |
|
| Q |
329 |
aacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataacttcaatagtt |
422 |
Q |
| |
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|||||||||| | ||| |||||| ||||| || |||||||||||| ||||| ||||||| |||| ||||| ||||||||| | |||||||| |
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| T |
29288333 |
aacagctatacaaatgaatttgttaggaagttcatatcctccatcacaaggagtatttagtccttcttcaatttcatatataattccaatagtt |
29288426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 29440747 - 29440636
Alignment:
| Q |
14 |
aaatattattcataaaatgagaatatat-aatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatga |
112 |
Q |
| |
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|||||||||| | ||| ||||||||| | ||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||| |
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| T |
29440747 |
aaatattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatga |
29440648 |
T |
|
| Q |
113 |
agacattcaatc |
124 |
Q |
| |
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|||||||||||| |
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| T |
29440647 |
agacattcaatc |
29440636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 29444394 - 29444283
Alignment:
| Q |
14 |
aaatattattcataaaatgagaatatat-aatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatga |
112 |
Q |
| |
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|||||||||| | ||| ||||||||| | ||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||| |
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| T |
29444394 |
aaatattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatga |
29444295 |
T |
|
| Q |
113 |
agacattcaatc |
124 |
Q |
| |
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|||||||||||| |
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| T |
29444294 |
agacattcaatc |
29444283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 13431577 - 13431643
Alignment:
| Q |
90 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
156 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| |
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| T |
13431577 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtatttcatcagcaactaatt |
13431643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 13303393 - 13303327
Alignment:
| Q |
90 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
156 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| | |||||||||||| ||||| |
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| T |
13303393 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtttttcatcagcaactaatt |
13303327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 29 - 434
Target Start/End: Complemental strand, 21287462 - 21287057
Alignment:
| Q |
29 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
128 |
Q |
| |
|
||||||||| ||| |||||||||||||||| || ||||| |||||| ||| | || ||||||||||| || ||||||||| ||||| ||||||| |
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| T |
21287462 |
aatgagaatttatgatcctgatcaagcaacattagaagctctaagaggttctaacatagaacttgtcattggagttcctaatgaaaacattgaatcaatt |
21287363 |
T |
|
| Q |
129 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccagg-tgttaattttaggtacattgttgttgggaatgaaata |
227 |
Q |
| |
|
|| || | |||||||||| | | |||||||||||||||||||| |||| ||| | | ||| ||| || ||||| |||||||||||||||||||||||| |
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|
| T |
21287362 |
gctaatagtgtttcatcagctacttattgggtccaaaacaatatattaaattactc-caaggatgtcaaatttagatacattgttgttgggaatgaaata |
21287264 |
T |
|
| Q |
228 |
aatcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaagattt |
327 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||| | |||||| ||||||| || ||||||| |||||||||| || || ||||||| ||| ||| |
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|
| T |
21287263 |
gatcctagtaatgatccaacatcaacatttgttctaccagcaatgttgaacattaatgcagcactcacatctgccaatttacagcatcaaatcaaggttt |
21287164 |
T |
|
| Q |
328 |
caacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataacttcaatagttggttt |
427 |
Q |
| |
|
|||| |||||| | ||| |||||||||||| || |||||||||||| |||| |||||||| |||| | ||| |||||||||| |||| ||| ||| |
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| T |
21287163 |
caactgctatacaaatgaatttgttgggaagttcctatcctccatcatcaggtgcatttagcacttcttccattttatatataactccaattgttaattt |
21287064 |
T |
|
| Q |
428 |
tcttgtg |
434 |
Q |
| |
|
||||||| |
|
|
| T |
21287063 |
tcttgtg |
21287057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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