View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17758_low_2 (Length: 724)
Name: NF17758_low_2
Description: NF17758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17758_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 43 - 708
Target Start/End: Complemental strand, 31083238 - 31082574
Alignment:
| Q |
43 |
aaaagaattaatgtttgtttaagttttctgaatnnnnnnngttatgcaaattttnnnnnnnttaataaacttgttgatggacgacatattactagtttac |
142 |
Q |
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| T |
31083238 |
aaaagaattaatgtttgtttaagttttctgaataaaaaaagttatgcaaatttttaaaaaattaataaacttgttaatggac---atattactagtttac |
31083142 |
T |
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| Q |
143 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
242 |
Q |
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| T |
31083141 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
31083042 |
T |
|
| Q |
243 |
aatcagttattgcattttcgattcgatgatcactctcataccaggttcaaagggtttaagctacagggacctttgttacttttactaaataaactcaagt |
342 |
Q |
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| T |
31083041 |
aatcagttattgcattttcgattcgatgatcactctcataccgggttcaaaggg-ttaagctgcagggatctttgttacttttactaaataaactcaagt |
31082943 |
T |
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| Q |
343 |
ttaaatgcactttttattcccttattttnnnnnnnngtgaagttttgtccccttattttaaaaattggtttattggttcactagttca-nnnnnnnnaat |
441 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
31082942 |
ttaaatgcactttttattcccttattttaaaaaaaagtgaagttttgtccccttattttaaaatttggtttattggttcactagttcatttttttttaat |
31082843 |
T |
|
| Q |
442 |
gtatcatttctgtaacattttagtatca--tttacatatgcttcatatacgctgattatgtgacaacacttatgtagcctttttgtttcttgcatggata |
539 |
Q |
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| T |
31082842 |
gtatcatttctatcacattttagtatcatttttacatatgttgcatattcgctgatgatgtaacgacacttatgtagcctttttgtttcttgcatggata |
31082743 |
T |
|
| Q |
540 |
ttcaatgtagcacataagccgagtcacgtcattaatgaataagtcataatcgaatgaccaaatgtgcgtttaaacaaacaacaaataatttgaaactgaa |
639 |
Q |
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| T |
31082742 |
ttcaatgtagcacataagccgagtcacgtcattaatgaataagtcataatcgaatgaccaaatgtgcgtttaaacaaacaacaaataatttgaaactgaa |
31082643 |
T |
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| Q |
640 |
aatcaaattaaaatctaagcacatttgtctcaataccagggattaatcctattgacaatgtctcaatac |
708 |
Q |
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| T |
31082642 |
aatcaaattaaaatctaagcacatttgtctcaataccagggattaatcctattgacaatgtctcaatac |
31082574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31083310 - 31083253
Alignment:
| Q |
1 |
agattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
58 |
Q |
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| T |
31083310 |
agattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
31083253 |
T |
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